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Lag0018609 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018609
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr5:30679911..30681710
RNA-Seq ExpressionLag0018609
SyntenyLag0018609
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0052923 - all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (molecular function)
GO:0052924 - all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2318763.1 hypothetical protein GH714_010529 [Hevea brasiliensis]5.8e-1667.19Show/hide
Query:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
        M VTSA+CQ +WLR+I+ DMK  Q EAT I+CDNQSTIAM K+ VHH+ TRHI+T HHF+REL+
Subjt:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
KAG6487976.1 hypothetical protein ZIOFF_056734 [Zingiber officinale]8.3e-1562.5Show/hide
Query:  VTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
        VT A+C+ VWLRRIL D++Q Q+  TTIFCDN STIAM K+PV H  T+HI+ RHHFIR+ + D
Subjt:  VTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
KAG6520057.1 hypothetical protein ZIOFF_017087 [Zingiber officinale]8.3e-1563.49Show/hide
Query:  TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
        T A+C+ VWLRRIL D++Q Q+  TTIFCDN STIAM K+PV H  T+HI+ RHHFIR+L+ D
Subjt:  TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
KAG8502460.1 hypothetical protein CXB51_000380 [Gossypium anomalum]1.5e-1670.31Show/hide
Query:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
        M VT+A+ Q VW+RRIL D+KQ Q EATTI+CDNQSTIAM K+ V+H+ TRHI+TRHHFIREL+
Subjt:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
TXG64214.1 hypothetical protein EZV62_011208 [Acer yangbiense]5.8e-1668.75Show/hide
Query:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
        M   SA+CQ VWLRRIL DMKQHQK  T + CDNQSTIAM +  V H+ TRHI+TRHHFIREL+
Subjt:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
TrEMBL top hitse value%identityAlignment
A0A0K9QAL3 Reverse transcriptase Ty1/copia-type domain-containing protein5.3e-1563.93Show/hide
Query:  TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
        TSASC+VVWL+RILGD++Q  ++ T I+CDN S IAM K+PV H+ T+HI+ RHHFIREL+
Subjt:  TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
A0A2H9ZU38 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-1453.03Show/hide
Query:  VTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVDAL
        +T A CQVVWLRR+L ++ Q Q++AT +FCDN++TIA+ K+P+ H  T+H+D +HHFIREL  +++
Subjt:  VTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVDAL
A0A5C7I554 SynN domain-containing protein2.8e-1668.75Show/hide
Query:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
        M   SA+CQ VWLRRIL DMKQHQK  T + CDNQSTIAM +  V H+ TRHI+TRHHFIREL+
Subjt:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
A0A6A6N2Q9 Uncharacterized protein2.8e-1667.19Show/hide
Query:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
        M VTSA+CQ +WLR+I+ DMK  Q EAT I+CDNQSTIAM K+ VHH+ TRHI+T HHF+REL+
Subjt:  MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELL
A0A6V7QC69 Uncharacterized protein5.3e-1560.94Show/hide
Query:  VTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
        VT  +CQ +WLRRIL D+KQ+Q + T I+CDNQSTIAM K+PVH N T+HI+ R+HFIR+ L +
Subjt:  VTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-0941.27Show/hide
Query:  TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
        T    +++WL+R L ++  HQKE   ++CD+QS I ++K+ ++H  T+HID R+H+IRE++ D
Subjt:  TSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVD
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.9e-0431.58Show/hide
Query:  ASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRE
        A+ +++WL +   +++    + T +FCDN + I +A + V H  T+HI++  H +RE
Subjt:  ASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCACTTCAGCATCATGTCAAGTTGTATGGTTGAGAAGGATTTTAGGTGACATGAAGCAACATCAAAAGGAGGCTACCACAATTTTCTGTGACAATCAGTCCAC
CATTGCGATGGCCAAAGACCCAGTTCATCATAACTGTACAAGGCATATTGATACTCGACATCATTTCATACGGGAGTTGTTAGTTGATGCCCTTCGCTCACAGCCACAAA
TCTGGCAGGAAGAAAAAGGTTCGTCGATTCCGTCTATGCTTCGCAGTTCTGCTCCCGCCGGATCTGTCAATTCCGTTTGTCGATTTCGTCAGGCTAAGATACCGAATCTG
TGCTTCTCAGATCTGCTCGCGCCGGATCTGTGCTTCGCAGTTGTGCTCGATTTCGTCGTCGAAGAAGGAGCAAAGATTTCTCTCTCTCTCTCGGTCGGTCATGTTGTTTC
TCTCTCTCCTCTGTGTTCGGTGTTGGAAAGGGAGGAGGGACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCACTTCAGCATCATGTCAAGTTGTATGGTTGAGAAGGATTTTAGGTGACATGAAGCAACATCAAAAGGAGGCTACCACAATTTTCTGTGACAATCAGTCCAC
CATTGCGATGGCCAAAGACCCAGTTCATCATAACTGTACAAGGCATATTGATACTCGACATCATTTCATACGGGAGTTGTTAGTTGATGCCCTTCGCTCACAGCCACAAA
TCTGGCAGGAAGAAAAAGGTTCGTCGATTCCGTCTATGCTTCGCAGTTCTGCTCCCGCCGGATCTGTCAATTCCGTTTGTCGATTTCGTCAGGCTAAGATACCGAATCTG
TGCTTCTCAGATCTGCTCGCGCCGGATCTGTGCTTCGCAGTTGTGCTCGATTTCGTCGTCGAAGAAGGAGCAAAGATTTCTCTCTCTCTCTCGGTCGGTCATGTTGTTTC
TCTCTCTCCTCTGTGTTCGGTGTTGGAAAGGGAGGAGGGACATTAG
Protein sequenceShow/hide protein sequence
MDVTSASCQVVWLRRILGDMKQHQKEATTIFCDNQSTIAMAKDPVHHNCTRHIDTRHHFIRELLVDALRSQPQIWQEEKGSSIPSMLRSSAPAGSVNSVCRFRQAKIPNL
CFSDLLAPDLCFAVVLDFVVEEGAKISLSLSVGHVVSLSPLCSVLEREEGH