CuGenDBv2

Gene ID	Lag0018630
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr5:31207891..31208496
RNA-Seq Expression	Lag0018630
Synteny	Lag0018630
Gene Ontology terms	NA
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022146774.1 uncharacterized protein LOC111015901 [Momordica charantia]

4.1e-42

51.72

Show/hide

Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   +   S K+EF+E EA  + HPHNDALV+TL IANAKVHRIL++GGSS ++ S TA+ AM LG + L+ SLTPL+GFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK
          K++TRM++FLVVD   +YN IL RPT+H L+ + STYHQ +KFPT  GVG + GEQ++SRECY+ ++R  DK
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]

1.0e-37

46.74

Show/hide

Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   ++    K+EF E E   I HPHNDALV+ L IANAKVH IL++GGSS +++S TA+  M LG   L+ S  PLVGFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSASGD
          K++T+M++FLVVD   + NAILGRPT+H LK + S YHQ +KFPT  G+G + GEQ++SRECY+ +++  DK     S +GD
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSASGD

XP_022155186.1 uncharacterized protein LOC111022321 [Momordica charantia]

5.0e-40

50.57

Show/hide

Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   +      +EF+E EA  + HPHNDALV+TL IAN KVHRIL++GGSSA+++S TA+ AM LG   L+ S  PLVGFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK
          K+VT+M++FLVV+   +YNAILGRPT+H LK + STYHQ  KFPT  GVG + GEQ++SRECY  ++R+ D+
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK

XP_022158093.1 uncharacterized protein LOC111024662 [Momordica charantia]

1.5e-39

46.96

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Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y     G   K++F+E E  R+ HPHNDALV+TL I N KVHRIL++GGSS  ++S TA+ AM LG   L+ +L PLVGFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSA
          + +T+++ FLVVD   +YNAILGRPT+H LK + STYH+ LKFPT+ G+  V GEQ++S ECY+ +LR  D   +A+++
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSA

XP_022158687.1 uncharacterized protein LOC111025147 [Momordica charantia]

3.8e-40

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Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   +   S  +EF+E EA  + HPHNDALV+TL IAN KVHRIL++GGSSA+++S T +  M LG   L+ S  PL+GFGRE                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK
          K+VT+M++FLVVD   +YNAILGR T+H LK + STYHQ +KFPT  GVG + GEQ++SRECY+ ++R  D+
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CZ14 uncharacterized protein LOC111015901

2.0e-42

51.72

Show/hide

Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   +   S K+EF+E EA  + HPHNDALV+TL IANAKVHRIL++GGSS ++ S TA+ AM LG + L+ SLTPL+GFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK
          K++TRM++FLVVD   +YN IL RPT+H L+ + STYHQ +KFPT  GVG + GEQ++SRECY+ ++R  DK
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK

A0A6J1DAK4 uncharacterized protein LOC111018902

5.0e-38

46.74

Show/hide

Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   ++    K+EF E E   I HPHNDALV+ L IANAKVH IL++GGSS +++S TA+  M LG   L+ S  PLVGFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSASGD
          K++T+M++FLVVD   + NAILGRPT+H LK + S YHQ +KFPT  G+G + GEQ++SRECY+ +++  DK     S +GD
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSASGD

A0A6J1DQY2 uncharacterized protein LOC111022321

2.4e-40

50.57

Show/hide

Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   +      +EF+E EA  + HPHNDALV+TL IAN KVHRIL++GGSSA+++S TA+ AM LG   L+ S  PLVGFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK
          K+VT+M++FLVV+   +YNAILGRPT+H LK + STYHQ  KFPT  GVG + GEQ++SRECY  ++R+ D+
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK

A0A6J1DV51 uncharacterized protein LOC111024662

7.0e-40

46.96

Show/hide

Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y     G   K++F+E E  R+ HPHNDALV+TL I N KVHRIL++GGSS  ++S TA+ AM LG   L+ +L PLVGFG E                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSA
          + +T+++ FLVVD   +YNAILGRPT+H LK + STYH+ LKFPT+ G+  V GEQ++S ECY+ +LR  D   +A+++
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSA

A0A6J1DXV4 uncharacterized protein LOC111025147

1.8e-40

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Query:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------
        +Y   +   S  +EF+E EA  + HPHNDALV+TL IAN KVHRIL++GGSSA+++S T +  M LG   L+ S  PL+GFGRE                
Subjt:  MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGRE----------------

Query:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK
          K+VT+M++FLVVD   +YNAILGR T+H LK + STYHQ +KFPT  GVG + GEQ++SRECY+ ++R  D+
Subjt:  --KTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTACTCGCTCCTACTTGATGGAAACTCACCAAAGTTAGAGTTTACAGAGAAGGAGGCTGCGAGAATACGTCATCCGCACAACGATGCGCTGGTAGTCACTCTAACGAT
TGCCAACGCAAAAGTTCACCGGATCCTCATCAATGGGGGGAGTTCTGCTAATGTGCTCTCAACCACTGCGTTCGACGCCATGAAGCTGGGAAGTGATCGCCTAAGGCCGA
GCCTCACGCCGCTAGTGGGGTTTGGTAGAGAAAAAACAGTAACAAGAATGATCAACTTCCTAGTGGTAGACTGCGTGCCAGCATATAATGCCATCTTGGGACGACCCACC
CTACATGGGCTTAAAGTTGTAGCCTCAACCTATCACCAAGTCCTGAAATTCCCAACCGAAGAAGGTGTAGGAGTGGTGCATGGCGAGCAAAAGATGTCGAGGGAATGTTA
CTTTATGGCGCTCAGGAACATCGACAAAAATGTTCAAGCAACGTCGGCCTCGGGAGATGGCCGAGGCCGGGCATTTGAGGGATCAAGCTATCCCCTTCCAATGGAGCATT
GA

mRNA sequence

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Protein sequence

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MYSLLLDGNSPKLEFTEKEAARIRHPHNDALVVTLTIANAKVHRILINGGSSANVLSTTAFDAMKLGSDRLRPSLTPLVGFGREKTVTRMINFLVVDCVPAYNAILGRPT
LHGLKVVASTYHQVLKFPTEEGVGVVHGEQKMSRECYFMALRNIDKNVQATSASGDGRGRAFEGSSYPLPMEH

Lag0018630 (gene) of Sponge gourd (AG-4) v1 genome