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Lag0018632 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018632
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:31245033..31245638
RNA-Seq ExpressionLag0018632
SyntenyLag0018632
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4262994.1 unnamed protein product [Prunus armeniaca]2.2e-4049.43Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGER---------------
        SK  GG+GF+DL+ FNQALL KQC  I+  P S +AR+ + RY PS+ FL+A VG  PSFIWRS+ WGKELL KG+RWR+GNGE                
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGER---------------

Query:  ---------PNARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRLT
                  +  V DLFT+SG WN  L++  F  QE   IL IPL  +A  D +IWH+E+  +YSVKSGY+LT
Subjt:  ---------PNARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRLT

ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]6.7e-4251.45Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------
        SK  GG+GF+DL+ FNQALLAKQCWRI+  P S +AR+ + RY PS  FL+A VG  PSFIWRS+ WGKELL KG+RWR+G+G                 
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------

Query:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
              + P + RV DLFT+SG WN  L++  F  QE   IL IPL  +A  D +IWH+E+  +YSVKSGYRL
Subjt:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]3.3e-4150.87Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------
        SK  GG+GF+DL+ FNQALLAKQCWRI+  P S +AR+ + RY PS  FL+A VG  PSFIW S+ WGKELL KG+RWR+G+G                 
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------

Query:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
              + P + RV DLFT+SG WN  L++  F  QE   IL IPL  +A  D +IWH+E+  +YSVKSGYRL
Subjt:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]7.4e-4150.87Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------
        SK  GG+GF+DL+ FNQALLAKQCWRI+  P S +AR+ + RY PS  FL+A VG  PSFIWRS+ WGKELL KG+RWR+GNG                 
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------

Query:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
              + P +  V DLFT+SG WN  L++  F  QE    L IPL  +A  D +IWH+E+  +YSVKSGYRL
Subjt:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]2.4e-3948Show/hide
Query:  MSKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGER---------PN---
        + KC GGMGF+DL+ FN+ALLAKQCWRI++ P S L+RVLKGRYF    F++A +   PS+IWRSI+WG++LL KG+RWRIGNG+          PN   
Subjt:  MSKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGER---------PN---

Query:  ------------ARVRDLFT-ASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
                    +RV  L     G W   ++R  F+P EA+ ILSIP+ + A ED +IW++EK  +YSV+SGY++
Subjt:  ------------ARVRDLFT-ASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

TrEMBL top hitse value%identityAlignment
A0A251NPF0 Reverse transcriptase domain-containing protein3.3e-4251.45Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------
        SK  GG+GF+DL+ FNQALLAKQCWRI+  P S +AR+ + RY PS  FL+A VG  PSFIWRS+ WGKELL KG+RWR+G+G                 
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------

Query:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
              + P + RV DLFT+SG WN  L++  F  QE   IL IPL  +A  D +IWH+E+  +YSVKSGYRL
Subjt:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

A0A5E4FZN9 PREDICTED: retrotransposon3.6e-4150.87Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------
        SK  GG+GF+DL+ FNQALLAKQCWRI+  P S +AR+ + RY PS  FL+A VG  PSFIWRS+ WGKELL KG+RWR+GNG                 
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------

Query:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
              + P +  V DLFT+SG WN  L++  F  QE    L IPL  +A  D +IWH+E+  +YSVKSGYRL
Subjt:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

A0A6J5TGK7 CCHC-type domain-containing protein1.0e-4049.43Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGER---------------
        SK  GG+GF+DL+ FNQALL KQC  I+  P S +AR+ + RY PS+ FL+A VG  PSFIWRS+ WGKELL KG+RWR+GNGE                
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGER---------------

Query:  ---------PNARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRLT
                  +  V DLFT+SG WN  L++  F  QE   IL IPL  +A  D +IWH+E+  +YSVKSGY+LT
Subjt:  ---------PNARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRLT

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)3.3e-4251.45Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------
        SK  GG+GF+DL+ FNQALLAKQCWRI+  P S +AR+ + RY PS  FL+A VG  PSFIWRS+ WGKELL KG+RWR+G+G                 
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------

Query:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
              + P + RV DLFT+SG WN  L++  F  QE   IL IPL  +A  D +IWH+E+  +YSVKSGYRL
Subjt:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

M5WJW2 Reverse transcriptase domain-containing protein1.6e-4150.87Show/hide
Query:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------
        SK  GG+GF+DL+ FNQALLAKQCWRI+  P S +AR+ + RY PS  FL+A VG  PSFIW S+ WGKELL KG+RWR+G+G                 
Subjt:  SKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG-----------------

Query:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
              + P + RV DLFT+SG WN  L++  F  QE   IL IPL  +A  D +IWH+E+  +YSVKSGYRL
Subjt:  ------ERP-NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.8e-0523.73Show/hide
Query:  GGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRY----FPSSKFLDAVVGNRPSFIWRSIMWG-KELLGKGIRW---------------------
        GG+G +  K+ N+AL++K  WR++ +  S    VL+ +Y       S++L  +     S  WRSI  G ++++  G+ W                     
Subjt:  GGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRY----FPSSKFLDAVVGNRPSFIWRSIMWG-KELLGKGIRW---------------------

Query:  -RIGNGERP----NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQV-ACEDAVIWHFEKLRLYSVKSGYRL
          + NGERP        +DL+     W+   I  + +      + ++ L  V    D + W F +   +SV+S Y +
Subjt:  -RIGNGERP----NARVRDLFTASGHWNEILIRQHFSPQEARYILSIPLCQV-ACEDAVIWHFEKLRLYSVKSGYRL

P93295 Uncharacterized mitochondrial protein AtMg003109.8e-2055.7Show/hide
Query:  GGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG
        GG+GF+DL  FNQALLAKQ +RI+ QP + L+R+L+ RYFP S  ++  VG RPS+ WRSI+ G+ELL +G+   IG+G
Subjt:  GGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.4e-0829.2Show/hide
Query:  LKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGE---------------RP--------NARVRDLFTASG---HWNEILIRQHFSPQ
        +K RYF     LDA V  + S+ W S++ G  LL KG R  IG+G+               RP           + +LF   G    W++  I Q     
Subjt:  LKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGE---------------RP--------NARVRDLFTASG---HWNEILIRQHFSPQ

Query:  EARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL
        +  +I  I L +    D +IW++     Y+V+SGY L
Subjt:  EARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRL

AT4G29090.1 Ribonuclease H-like superfamily protein1.3e-2235.2Show/hide
Query:  KCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGE------------RPNA-
        K  GG+GFKD++ FN ALL KQ WR++S+P S +A+V K RYF  S  L+A +G+RPSF+W+SI   +E+L +G R  +GNGE            +P + 
Subjt:  KCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGE------------RPNA-

Query:  -------------------RVRDLFTASG-HWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGY
                           +V DL   SG  W + +I   F   E + I  +        D+  W +     Y+VKSGY
Subjt:  -------------------RVRDLFTASG-HWNEILIRQHFSPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGY

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.0e-2155.7Show/hide
Query:  GGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG
        GG+GF+DL  FNQALLAKQ +RI+ QP + L+R+L+ RYFP S  ++  VG RPS+ WRSI+ G+ELL +G+   IG+G
Subjt:  GGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAGTGTGTGGGGGGAATGGGCTTTAAGGACCTGAAAACCTTTAACCAGGCCCTATTGGCCAAACAGTGTTGGAGGATAGTCAGTCAGCCAACTTCTTACTTGGC
TCGTGTTCTGAAAGGGCGGTACTTTCCATCCTCGAAGTTCTTGGATGCAGTGGTAGGGAATCGACCTTCCTTTATCTGGAGGAGCATTATGTGGGGGAAGGAGTTGCTGG
GGAAGGGGATTCGTTGGAGGATCGGGAATGGAGAAAGGCCTAATGCTAGAGTGAGGGATTTGTTTACGGCGTCAGGGCATTGGAATGAGATCCTTATTCGGCAACACTTT
AGCCCTCAAGAGGCAAGGTATATTCTCTCTATTCCTCTATGCCAGGTTGCTTGTGAGGATGCTGTCATTTGGCACTTTGAGAAGTTGAGGCTATATTCAGTAAAGAGTGG
GTATCGGTTGACCAATGCCCTATATTGGTCCAAAGCCCTTCATTTTCGTCCCCAAAGTCAATACATAAATGGTGGAATGCCTGCTGGAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAAGTGTGTGGGGGGAATGGGCTTTAAGGACCTGAAAACCTTTAACCAGGCCCTATTGGCCAAACAGTGTTGGAGGATAGTCAGTCAGCCAACTTCTTACTTGGC
TCGTGTTCTGAAAGGGCGGTACTTTCCATCCTCGAAGTTCTTGGATGCAGTGGTAGGGAATCGACCTTCCTTTATCTGGAGGAGCATTATGTGGGGGAAGGAGTTGCTGG
GGAAGGGGATTCGTTGGAGGATCGGGAATGGAGAAAGGCCTAATGCTAGAGTGAGGGATTTGTTTACGGCGTCAGGGCATTGGAATGAGATCCTTATTCGGCAACACTTT
AGCCCTCAAGAGGCAAGGTATATTCTCTCTATTCCTCTATGCCAGGTTGCTTGTGAGGATGCTGTCATTTGGCACTTTGAGAAGTTGAGGCTATATTCAGTAAAGAGTGG
GTATCGGTTGACCAATGCCCTATATTGGTCCAAAGCCCTTCATTTTCGTCCCCAAAGTCAATACATAAATGGTGGAATGCCTGCTGGAATATGA
Protein sequenceShow/hide protein sequence
MSKCVGGMGFKDLKTFNQALLAKQCWRIVSQPTSYLARVLKGRYFPSSKFLDAVVGNRPSFIWRSIMWGKELLGKGIRWRIGNGERPNARVRDLFTASGHWNEILIRQHF
SPQEARYILSIPLCQVACEDAVIWHFEKLRLYSVKSGYRLTNALYWSKALHFRPQSQYINGGMPAGI