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Lag0018641 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018641
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionWD repeat-containing protein 25
Genome locationchr5:31411920..31412285
RNA-Seq ExpressionLag0018641
SyntenyLag0018641
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600751.1 WD repeat-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia]1.5e-6194.21Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKCNFSLD KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNGNIS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

XP_016901209.1 PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo]5.2e-6294.21Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCP VRCHPFDP FIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDY+SSL IHKLKASEQACID+AI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNG IS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

XP_022941667.1 WD repeat-containing protein 25 [Cucurbita moschata]1.5e-6194.21Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKCNFSLD KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNGNIS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

XP_023526021.1 WD repeat-containing protein 25 [Cucurbita pepo subsp. pepo]5.8e-6193.39Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKCNFSLD KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSW+GNIS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

XP_038903500.1 WD repeat-containing protein 25 [Benincasa hispida]3.4e-6193.39Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCP VRCHPFDP FIAQSNG YIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDY+SSL IHKLKASEQACID+AI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNG IS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

TrEMBL top hitse value%identityAlignment
A0A0A0L568 WD_REPEATS_REGION domain-containing protein1.4e-6092.56Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCP VRCHP DP FIAQSNG YIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDY+SSL IHKLKASEQACID+AI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNG IS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

A0A1S4DZ03 WD repeat-containing protein 25 isoform X12.5e-6294.21Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCP VRCHPFDP FIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDY+SSL IHKLKASEQACID+AI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNG IS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

A0A6J1CMQ5 WD repeat-containing protein 255.3e-6089.26Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCPCVRCHPFDPVFIAQSNGDY+AIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLD KQIISGSSDGS+YFYDY+SSL + K KA E ACIDVAI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HP LPNVIASCSWNGNI++FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

A0A6J1FN47 WD repeat-containing protein 257.4e-6294.21Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKCNFSLD KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNGNIS+FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

A0A6J1JQD9 WD repeat-containing protein 251.1e-6092.56Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRY SH VSGFPIKC+FSLD KQIISGSSDGSIYFYDY+SSL IHKLKASEQAC DVAI
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HPTLPNVIASCSWNGNI +FQ
Subjt:  HPTLPNVIASCSWNGNISLFQ

SwissProt top hitse value%identityAlignment
A8X8C6 WD repeat-containing protein tag-1251.8e-0434.74Show/hide
Query:  NGDYIAIFSLNPPFKLDKY------KRYESHGVSGFPIKCNFSL-DAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIAS
        NG YI   +L+   KL  +      K+Y+ H  + + I  NFS+   K IISGS D  IY ++ ++   +  L+   QA I    HP + N+IAS
Subjt:  NGDYIAIFSLNPPFKLDKY------KRYESHGVSGFPIKCNFSL-DAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIAS

E9Q349 WD repeat-containing protein 254.1e-2537.82Show/hide
Query:  EAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIH
        E YTCP +  HP +PVF+AQ+NG+Y+A+FS   P+++ + +RYE H V G+ + C  S     +++GS+DG +  + + ++     L+   QAC+    H
Subjt:  EAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIH

Query:  PTLPNVIASCSWNGNISLF
        P LP+V+ +CSW G+I ++
Subjt:  PTLPNVIASCSWNGNISLF

P40968 Pre-mRNA-processing factor 176.5e-0731.4Show/hide
Query:  YTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLK
        ++ P +  HP    F AQS  + I  FSL P +K    K ++ H  +G+ I   FS D + I SG S   ++ +D+ +S  ++ +K
Subjt:  YTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLK

Q64LD2 WD repeat-containing protein 251.1e-2537.82Show/hide
Query:  EAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIH
        E +TCP +  HP +PVF+AQ+NG+Y+A+FS   P+++ + +RYE H V G+ + C  S     +++GS+DG +  Y + ++     L+   QAC+    H
Subjt:  EAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIH

Query:  PTLPNVIASCSWNGNISLF
        P LP+V+A+CSW G++ ++
Subjt:  PTLPNVIASCSWNGNISLF

Arabidopsis top hitse value%identityAlignment
AT1G10580.1 Transducin/WD40 repeat-like superfamily protein6.0e-1633.33Show/hide
Query:  YTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPT
        ++ P +  HP      AQS  + I I+S    F+L+K KR+  H V+G+  + NFS D + ++SG  +G  +F+D++S      LK     CI    HP 
Subjt:  YTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPT

Query:  LPNVIASCSWNGNI
          + +A+C W+G I
Subjt:  LPNVIASCSWNGNI

AT5G54520.1 Transducin/WD40 repeat-like superfamily protein7.1e-4966.94Show/hide
Query:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI
        +EAYTCPC++ HP DPVFIAQS+G+Y AIFS NPPFKL+KYKR+E H V+GFPIKCNFS D + + SGSSDGS+Y YDY+S+  I KLKA EQ C++V+ 
Subjt:  MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAI

Query:  HPTLPNVIASCSWNGNISLFQ
        HP LPNV+A+CSWNG +S+F+
Subjt:  HPTLPNVIASCSWNGNISLFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCTACACTTGTCCATGCGTGAGATGCCACCCCTTTGATCCAGTTTTTATTGCCCAATCGAACGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAA
GTTAGACAAATACAAGAGGTATGAAAGTCATGGAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCCTGGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTA
TATATTTTTACGATTATGAATCATCCTTGCCTATACATAAACTAAAAGCATCTGAACAGGCTTGCATAGATGTTGCCATCCACCCGACCTTGCCTAATGTAATTGCTTCC
TGCAGCTGGAATGGAAATATTTCACTGTTCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCTACACTTGTCCATGCGTGAGATGCCACCCCTTTGATCCAGTTTTTATTGCCCAATCGAACGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAA
GTTAGACAAATACAAGAGGTATGAAAGTCATGGAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCCTGGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTA
TATATTTTTACGATTATGAATCATCCTTGCCTATACATAAACTAAAAGCATCTGAACAGGCTTGCATAGATGTTGCCATCCACCCGACCTTGCCTAATGTAATTGCTTCC
TGCAGCTGGAATGGAAATATTTCACTGTTCCAGTGA
Protein sequenceShow/hide protein sequence
MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYESSLPIHKLKASEQACIDVAIHPTLPNVIAS
CSWNGNISLFQ