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Lag0018643 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018643
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:31426454..31428230
RNA-Seq ExpressionLag0018643
SyntenyLag0018643
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144467.1 uncharacterized protein LOC111014147 [Momordica charantia]3.5e-3264.49Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG ++LK S  PLVGFGGERV PEG IE PVTFG G  +VTKM++ LVV+  S+YN ILGRPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY+T+++
Subjt:  CYWTALK

XP_022146774.1 uncharacterized protein LOC111015901 [Momordica charantia]6.0e-3261.68Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG E+LK SLTPL+GFGGER+ P+G IELP+TF     ++T+M++FLVVD  S+YN IL RPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY+T+++
Subjt:  CYWTALK

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]1.1e-3063.55Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG   LK S  PLVGFGGE V PEG IELPVTFG G  ++TKM++FLVVD  S+ N ILGRPT+H +KAI S YHQ +KFPTP G+G +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY+ ++K
Subjt:  CYWTALK

XP_022154102.1 uncharacterized protein LOC111021438 [Momordica charantia]6.7e-3164.15Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG+E LK SLTPL+GFGGERV P G IELPVTF  G  ++TKM++FLVVD  S+YN IL R T++ +KAI STYHQ +KFPTP GVG +KGEQ+  RE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTAL
        CY+T +
Subjt:  CYWTAL

XP_022155186.1 uncharacterized protein LOC111022321 [Momordica charantia]3.9e-3165.42Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG ++LK S  PLVGFGGERV  EG IELPVTFG G  +VTKM++FLVV+  S+YN ILGRPT+H +KAI STYHQ  KFPT  GVG +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY T+++
Subjt:  CYWTALK

TrEMBL top hitse value%identityAlignment
A0A6J1CTS4 uncharacterized protein LOC1110141471.7e-3264.49Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG ++LK S  PLVGFGGERV PEG IE PVTFG G  +VTKM++ LVV+  S+YN ILGRPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY+T+++
Subjt:  CYWTALK

A0A6J1CZ14 uncharacterized protein LOC1110159012.9e-3261.68Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG E+LK SLTPL+GFGGER+ P+G IELP+TF     ++T+M++FLVVD  S+YN IL RPT+H ++AI STYHQ +KFPTP GVG +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY+T+++
Subjt:  CYWTALK

A0A6J1DAK4 uncharacterized protein LOC1110189025.5e-3163.55Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG   LK S  PLVGFGGE V PEG IELPVTFG G  ++TKM++FLVVD  S+ N ILGRPT+H +KAI S YHQ +KFPTP G+G +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY+ ++K
Subjt:  CYWTALK

A0A6J1DKR9 uncharacterized protein LOC1110214383.2e-3164.15Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG+E LK SLTPL+GFGGERV P G IELPVTF  G  ++TKM++FLVVD  S+YN IL R T++ +KAI STYHQ +KFPTP GVG +KGEQ+  RE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTAL
        CY+T +
Subjt:  CYWTAL

A0A6J1DQY2 uncharacterized protein LOC1110223211.9e-3165.42Show/hide
Query:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE
        M LG ++LK S  PLVGFGGERV  EG IELPVTFG G  +VTKM++FLVV+  S+YN ILGRPT+H +KAI STYHQ  KFPT  GVG +KGEQ+ SRE
Subjt:  MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRE

Query:  CYWTALK
        CY T+++
Subjt:  CYWTALK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTTAGGGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGA
TGGACAGAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGTAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTT
CAACTTACCATCAGTTACTGAAGTTTCCAACTCCGAACGGTGTGGGAGTCGTCAAGGGAGAACAGAAGGAATCAAGGGAGTGTTACTGGACTGCACTAAAAGCTGTCAAG
CCACAGAGGGCCGAGGCCGACCAGAGAATGAGCCGAGGCCGAGCAGCAACACTTCCACCAATACTGAATCTGAACTTATGGAGTTTTAGGGTTTTTCGTTTATTGCATTC
TATCATTTTCGCCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTCGCCTCATCCAGAG
TGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGACTGAGCATCTTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTG
AGACCATGTGAGCCTGGACCGGCGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACTGGGCGAGCCTGGACTGCCGAAGTCTACCTTGCCTCATCCAGAGTGAG
ACCATGTGAGCCTAGATCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGAC
ATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAAAGCCAGGAC
CAAGCACCTCTTGCCAAGGCCGAGCACCTCTTGCCGAGGCCGAGCACAAACTTTAAAGGGAGTGTCTACTTCTATCCTACTTTGCAGGATGACAACAAAGCTACACATAA
GCCAGCCCAAGGCAAGGGTCATTACTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTTAGGGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGA
TGGACAGAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGTAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTT
CAACTTACCATCAGTTACTGAAGTTTCCAACTCCGAACGGTGTGGGAGTCGTCAAGGGAGAACAGAAGGAATCAAGGGAGTGTTACTGGACTGCACTAAAAGCTGTCAAG
CCACAGAGGGCCGAGGCCGACCAGAGAATGAGCCGAGGCCGAGCAGCAACACTTCCACCAATACTGAATCTGAACTTATGGAGTTTTAGGGTTTTTCGTTTATTGCATTC
TATCATTTTCGCCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTCGCCTCATCCAGAG
TGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGACTGAGCATCTTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTG
AGACCATGTGAGCCTGGACCGGCGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACTGGGCGAGCCTGGACTGCCGAAGTCTACCTTGCCTCATCCAGAGTGAG
ACCATGTGAGCCTAGATCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGAC
ATGTGAGCCTGGACCGACGAGTCTACCTCACATCCTCTGGCTTGAGCATCTTTACACCGGGCGAGCCTGGACTGTCGAAGTCTACCTCGCCTCATCCAGAAAGCCAGGAC
CAAGCACCTCTTGCCAAGGCCGAGCACCTCTTGCCGAGGCCGAGCACAAACTTTAAAGGGAGTGTCTACTTCTATCCTACTTTGCAGGATGACAACAAAGCTACACATAA
GCCAGCCCAAGGCAAGGGTCATTACTCTTAA
Protein sequenceShow/hide protein sequence
MRLGRELLKPSLTPLVGFGGERVTPEGSIELPVTFGDGQNAVTKMINFLVVDCMSAYNVILGRPTLHEMKAIASTYHQLLKFPTPNGVGVVKGEQKESRECYWTALKAVK
PQRAEADQRMSRGRAATLPPILNLNLWSFRVFRLLHSIIFAIKVQYSGVCTRQPTQASRHASLDYRVYLASSRVRPCEPGPTSLPHLLWTEHLYTGRAWTAEVYLASSRV
RPCEPGPASLPHILWLEHLYTGRAWTAEVYLASSRVRPCEPRSTSLPHILWLEHLYTGRAWTAEVYLASSRVRHVSLDRRVYLTSSGLSIFTPGEPGLSKSTSPHPESQD
QAPLAKAEHLLPRPSTNFKGSVYFYPTLQDDNKATHKPAQGKGHYS