; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018662 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018662
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:31999678..32001419
RNA-Seq ExpressionLag0018662
SyntenyLag0018662
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-1658.33Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC MST      F +     SKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-1658.33Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]9.3e-1658.33Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-1657.29Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC MST T    F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S +PSR+KRK S+ INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

TYK02147.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-1558.76Show/hide
Query:  MSMAATEEENQCSMSTST-HLHFPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLF-DEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC  S ST +  F +     SKK R STS FDRLK+TNDQ +R+M  L+ KLF +E N D K+H+ IPSRMKRK SV I+TEGSL V
Subjt:  MSMAATEEENQCSMSTST-HLHFPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLF-DEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.6e-1658.33Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC MST      F +     SKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7TQ06 Retrotransposon gag protein4.5e-1658.33Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7U974 Retrotransposon gag protein2.6e-1657.29Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC MST T    F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S +PSR+KRK S+ INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7VRG7 Retrotransposon gag protein1.3e-1557.29Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC M T      F +     S K R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5D3BBF9 Gag protease polyprotein4.5e-1658.33Show/hide
Query:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        +SMA  EEENQC  ST      F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  MSMAATEEENQCSMSTSTHLH-FPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCACCTTCACTTTCCAAAGGCTAAGTGTCTCCACTCGAAGAAAAGTCGATCTTCAAC
ATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTA
GCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTG
TACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTT
CCTCCTCCAAGTGCGAATGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTC
GAAGGTTCTCACGCCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCAAGTTCGAAGGTTCACACACTTCGCTCCAG
TTCCTTCTCCCAAATTCGAAGGTTCTCATGCGCTTCGCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAA
GGTTCATACGCGCTTCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCA
GTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTTCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCC
TTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAG
TTCAAAGTTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCGCAGCCCCTTCCTCCAAGTTCGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTC
GAAGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAA
ATTGACTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCACCTTCACTTTCCAAAGGCTAAGTGTCTCCACTCGAAGAAAAGTCGATCTTCAAC
ATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTA
GCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTG
TACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTT
CCTCCTCCAAGTGCGAATGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTC
GAAGGTTCTCACGCCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCAAGTTCGAAGGTTCACACACTTCGCTCCAG
TTCCTTCTCCCAAATTCGAAGGTTCTCATGCGCTTCGCGCTGCAGTTCCTTCCCTCCAAGTTTGAAGGTTCTCACATCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAA
GGTTCATACGCGCTTCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCA
GTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTTCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCC
TTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAG
TTCAAAGTTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCGCAGCCCCTTCCTCCAAGTTCGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTC
GAAGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAA
ATTGACTGTTGA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTHLHFPKAKCLHSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVLRCSSFSPSSRVLTL
YAIALFLLQVRRFFVVSCCVVPSPSSRVLSCTTATLFLLQVRMILCGALLHCSLFSQVRWFSRSFAGVSSPQVRRFSRLRCSSFFPRSKVLTRCVAVLSPKFEGSHTSLQ
FLLPNSKVLMRFALQFLPSKFEGSHIASPQFLPPSSKVHTRFATVLLPPSSKVLTRFATVPSSKFKGSHALRCSSFPQVRRFSRRFAAVPFSKFEGSHIASLRAALRCSS
FLQVRRFSLASLQFLPPNSKVSKVLKRCDSLQFLPPSSKFLMRFVAPSSKFEGSRSPFLQVRRFATEVLLLQVRSSPLLLFKCLAAVDVLVPLHLQMLAVDGVRFASSSK
IDC