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Lag0018669 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018669
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:32154798..32164242
RNA-Seq ExpressionLag0018669
SyntenyLag0018669
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.2e-0573.53Show/hide
Query:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR
        QI DS+ L FWGQDRV  WEHNHTRWN L P FR
Subjt:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-0877.78Show/hide
Query:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRY
        QIVDSI L FWGQDRVG WEHNHTRWN   P FR+Y
Subjt:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRY

XP_024021914.1 uncharacterized protein LOC112091756 [Morus notabilis]9.0e-0641.25Show/hide
Query:  QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSVKVQEVN
        +ELL +  +  I    Q + FYNGL + +K +V+ +ANG+LL K++NEA EIL+ +  NH  W  E  P+R ++ V EV+
Subjt:  QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSVKVQEVN

XP_024025759.1 uncharacterized protein LOC112092850 [Morus notabilis]1.2e-0541.25Show/hide
Query:  QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSVKVQEVN
        +ELL +  +  I    Q + FYNGL + ++ +V+A+ANG+LL K++NEA EIL+ +  NH  W  E  P+R +  V EV+
Subjt:  QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSVKVQEVN

XP_030505532.1 uncharacterized protein LOC115720524 [Cannabis sativa]5.3e-0640.85Show/hide
Query:  LNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSV
        LN  ++ + + + Q + FYNGL  AS+ V++ASANG++L K++NEA EIL+ + +N+  W    TP+   V
Subjt:  LNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSV

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein3.7e-0555.17Show/hide
Query:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR-RYSAVRRVQLWVYGGVYPQYLVL
        QIVDSI L F GQDR+G WEHN+TRWN L P FR R  AV          V P+Y V+
Subjt:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR-RYSAVRRVQLWVYGGVYPQYLVL

A0A5A7U2P4 Integrase catalytic domain-containing protein5.7e-0673.53Show/hide
Query:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR
        QI DS+ L FWGQDRV  WEHNHTRWN L P FR
Subjt:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFR

A0A5D3C3J6 Gag/pol protein4.7e-0877.78Show/hide
Query:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRY
        QIVDSI L FWGQDRVG WEHNHTRWN   P FR+Y
Subjt:  QIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRY

A0A6J1EEI2 uncharacterized protein LOC1114333944.8e-0547.69Show/hide
Query:  QSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGK-EETPSRSSVKVQEVN
        Q + FYNGL  A+K VV+ASANG++L KT+NEA EIL+ + +N+  W      P R +  V EV+
Subjt:  QSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGK-EETPSRSSVKVQEVN

W9RRR5 Retrotrans_gag domain-containing protein1.7e-0540Show/hide
Query:  QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSVKVQEVN
        +ELL +  +  I    Q + FYNGL + ++ +V+A+ANG+LL K++NE  EIL+ +  NH  W  E  P+R +  V EV+
Subjt:  QELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSRSSVKVQEVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTACCGCCACGAAAAAATAAGGAAATTGAGGCAGCGACGAGACGTTGTCATCTCGGGATTTTTGGCTTGGACATCTGCTACAGCACCGTCGAGATGCCACCAGC
TAGTGTCTCGATGCTATGCTATCAGATCGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTAGGTGGATGGGAACATAATCACACAAGATGGAATTTACTCT
TTCCCGACTTCAGGAGATATTCTGCAGTGCGAAGAGTGCAGTTGTGGGTCTATGGTGGAGTGTACCCACAGTATTTGGTGTTAAAGCTTCCCGGGAGCACTTTGGAGCAA
AAAGTACTTAAAAGGAGAAAATTAGGCCAAGTCCCGAGCATTGGAAGCAAGTTAAAGAAACTAAATAAGCTAGACCCGAGACGCTACCTTCTCAACTTCGATACGCTACA
AATTCAAGACCGCGCCTATTTACTATATGGAAAATTGCTCTCGGATTGCCCTAGTGTCGCGACGCTGTGGGCTAGCGTCGCAACGTTGTTCGCTAGCTTGATCTCCAAGT
ACTTTCCTTATTTGAGGACTTTGCGAGGAAGATGCACCCGCAAGAGGAGATTAAAGCGTACAGATGAAATAAACCCGATATGCGACCGCAACTGGCTTGCCGACAGAATA
ACTAGATTGTGGGATCTTCACAGAATCGTCCAAAATCTCCAATCTAGTATCAAATCTCTGAAGATTGTGGATTCTTACCTTCCAAGGCCTTTCACACTGATCTCGGCAAC
CAACCTCACCTTCCAAGGAATTGCGATCGGTTTGCGACCGCAAATTCCTCTGTCACATGTCATCAATTCTTCTTTGCAAGGATTTCTTTGCCGATTGGATTGGTTTATGC
TCAAAAGACCTGAATTCAATTTTGACCCTGAGATAGAGAAGACTTTCGACAGTGCCGAAATTGCTATGGAGCCACCTATTGGAGACCCTCTCAGTGCGCAGCAAAGAGGA
GCACAACCTAATAATGTGCATCAGCAAGATGTGGCAGCAAATAATCCATATTTATTGCAGATGAAAGGAATAGAGCCATCAGGGATTATGTGGCCGCAACTTTTTACAAT
CTCAATACAGGAATTGTTGAACCAGTCATTGATGTCAATCATTTTGAGCTCAAGTCAATCACAGCACTTTTACAATGGGTTGACTCAAGCTTCCAAAGCAGTAGTCAATG
CATCAGCTAATGGTTCATTGCTTAAAAAGACTTTCAATGAGGCAACTGAAATTCTAGACGTTGTTGTTGCAAATCACAGTTACTGGGGAAAAGAAGAAACACCTTCTAGG
AGCAGTGTCAAAGTCCAAGAAGTCAATCATCACGAGACACTCCCGAACGGATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTACCGCCACGAAAAAATAAGGAAATTGAGGCAGCGACGAGACGTTGTCATCTCGGGATTTTTGGCTTGGACATCTGCTACAGCACCGTCGAGATGCCACCAGC
TAGTGTCTCGATGCTATGCTATCAGATCGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTAGGTGGATGGGAACATAATCACACAAGATGGAATTTACTCT
TTCCCGACTTCAGGAGATATTCTGCAGTGCGAAGAGTGCAGTTGTGGGTCTATGGTGGAGTGTACCCACAGTATTTGGTGTTAAAGCTTCCCGGGAGCACTTTGGAGCAA
AAAGTACTTAAAAGGAGAAAATTAGGCCAAGTCCCGAGCATTGGAAGCAAGTTAAAGAAACTAAATAAGCTAGACCCGAGACGCTACCTTCTCAACTTCGATACGCTACA
AATTCAAGACCGCGCCTATTTACTATATGGAAAATTGCTCTCGGATTGCCCTAGTGTCGCGACGCTGTGGGCTAGCGTCGCAACGTTGTTCGCTAGCTTGATCTCCAAGT
ACTTTCCTTATTTGAGGACTTTGCGAGGAAGATGCACCCGCAAGAGGAGATTAAAGCGTACAGATGAAATAAACCCGATATGCGACCGCAACTGGCTTGCCGACAGAATA
ACTAGATTGTGGGATCTTCACAGAATCGTCCAAAATCTCCAATCTAGTATCAAATCTCTGAAGATTGTGGATTCTTACCTTCCAAGGCCTTTCACACTGATCTCGGCAAC
CAACCTCACCTTCCAAGGAATTGCGATCGGTTTGCGACCGCAAATTCCTCTGTCACATGTCATCAATTCTTCTTTGCAAGGATTTCTTTGCCGATTGGATTGGTTTATGC
TCAAAAGACCTGAATTCAATTTTGACCCTGAGATAGAGAAGACTTTCGACAGTGCCGAAATTGCTATGGAGCCACCTATTGGAGACCCTCTCAGTGCGCAGCAAAGAGGA
GCACAACCTAATAATGTGCATCAGCAAGATGTGGCAGCAAATAATCCATATTTATTGCAGATGAAAGGAATAGAGCCATCAGGGATTATGTGGCCGCAACTTTTTACAAT
CTCAATACAGGAATTGTTGAACCAGTCATTGATGTCAATCATTTTGAGCTCAAGTCAATCACAGCACTTTTACAATGGGTTGACTCAAGCTTCCAAAGCAGTAGTCAATG
CATCAGCTAATGGTTCATTGCTTAAAAAGACTTTCAATGAGGCAACTGAAATTCTAGACGTTGTTGTTGCAAATCACAGTTACTGGGGAAAAGAAGAAACACCTTCTAGG
AGCAGTGTCAAAGTCCAAGAAGTCAATCATCACGAGACACTCCCGAACGGATGTTAA
Protein sequenceShow/hide protein sequence
MPLPPRKNKEIEAATRRCHLGIFGLDICYSTVEMPPASVSMLCYQIVDSISLPFWGQDRVGGWEHNHTRWNLLFPDFRRYSAVRRVQLWVYGGVYPQYLVLKLPGSTLEQ
KVLKRRKLGQVPSIGSKLKKLNKLDPRRYLLNFDTLQIQDRAYLLYGKLLSDCPSVATLWASVATLFASLISKYFPYLRTLRGRCTRKRRLKRTDEINPICDRNWLADRI
TRLWDLHRIVQNLQSSIKSLKIVDSYLPRPFTLISATNLTFQGIAIGLRPQIPLSHVINSSLQGFLCRLDWFMLKRPEFNFDPEIEKTFDSAEIAMEPPIGDPLSAQQRG
AQPNNVHQQDVAANNPYLLQMKGIEPSGIMWPQLFTISIQELLNQSLMSIILSSSQSQHFYNGLTQASKAVVNASANGSLLKKTFNEATEILDVVVANHSYWGKEETPSR
SSVKVQEVNHHETLPNGC