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Lag0018670 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018670
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:32164300..32164653
RNA-Seq ExpressionLag0018670
SyntenyLag0018670
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030478190.1 uncharacterized protein LOC115695250 [Cannabis sativa]7.2e-1647.22Show/hide
Query:  CNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHL
        C + H FE+CP NPASV +VG +N     NPYSN++NP W+ HPNFSWGGQ  + S      +Q  P GF+           Q + QQP Q Q   TS L
Subjt:  CNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHL

Query:  ENLMRELM
        ENLMR+ M
Subjt:  ENLMRELM

XP_030487620.1 uncharacterized protein LOC115704559 [Cannabis sativa]1.9e-1645.95Show/hide
Query:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQST
        C  C + H FE+CP NPASV +VG +N     NPYSN++NPGW+ HPNFSWGGQ  + S      +Q  P GF             SQ  +P Q Q   T
Subjt:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQST

Query:  SHLENLMRELM
        S LE+LMR+ M
Subjt:  SHLENLMRELM

XP_030494694.1 uncharacterized protein LOC115710474 [Cannabis sativa]5.5e-1645.54Show/hide
Query:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQST
        C  C + H FE+CP NPASV +VG +N     NPYSN++NP W+ HPNFSWGGQ  + S      +Q    GF+           Q + QQP Q Q   T
Subjt:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQST

Query:  SHLENLMRELMT
        S LE+LMR+ MT
Subjt:  SHLENLMRELMT

XP_030509234.1 uncharacterized protein LOC115723914 [Cannabis sativa]5.5e-1646.3Show/hide
Query:  CNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHL
        C + H FE+CP NP SV +VG +N     NPYSN++NP W+QHPNFSWGGQ  + S      +Q   LGF+           Q + QQP Q Q   TS L
Subjt:  CNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHL

Query:  ENLMRELM
        E+LMR+ M
Subjt:  ENLMRELM

XP_030510138.1 uncharacterized protein LOC115724905 [Cannabis sativa]7.2e-1645.05Show/hide
Query:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQST
        C  C + H FE+CP NPASV +VG +N     NPYSN++NP W+ HPNFSWGGQ  + S      +Q  P GF+               QQP Q Q   T
Subjt:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQST

Query:  SHLENLMRELM
        S LE+LMR+ M
Subjt:  SHLENLMRELM

TrEMBL top hitse value%identityAlignment
A0A6J1CR45 uncharacterized protein LOC1110134643.5e-1641.86Show/hide
Query:  QVSTPMCTTCNEEHLFEDCPKNPASVYFV--GERNRVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQ---P
        QV+  +C+ C+E H++++CP NPASV++V  G     NPYSNT+NPGWR HPNFSWGG             QGG  GFN     +  QP     QQ   P
Subjt:  QVSTPMCTTCNEEHLFEDCPKNPASVYFV--GERNRVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQ---P

Query:  MQVQ----------PQSTSHLENLMRELM
         Q Q            + S+LEN+M+E M
Subjt:  MQVQ----------PQSTSHLENLMRELM

A0A6J1DY39 uncharacterized protein LOC1110256536.5e-1539.5Show/hide
Query:  QVSTPMCTTCNEEHLFEDCPKNPASVYFVGERN--RVNPYSNTFNPGWRQHPNFSWGGQ--HVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPM
        Q++   C  C + H  E+CP NP+S+Y+VG+ N  + NPYSNT+NPGW+QHPNFSW GQ    T  +   +     P GF +           +Q +  +
Subjt:  QVSTPMCTTCNEEHLFEDCPKNPASVYFVGERN--RVNPYSNTFNPGWRQHPNFSWGGQ--HVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPM

Query:  QVQPQSTSHLENLMRELMT
        Q   Q+ S++E LM+EL+T
Subjt:  QVQPQSTSHLENLMRELMT

A0A6J1DYG0 uncharacterized protein LOC1110257643.5e-1641.86Show/hide
Query:  QVSTPMCTTCNEEHLFEDCPKNPASVYFVGERN--RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFN----SQTQLKIAQPLQSQLQQ
        QV+  +C+ C+E H+++ CP NPASV++VG  N    NPYSNT+NPGWR HPNFSW G             QGG  GFN     Q +     P Q  +  
Subjt:  QVSTPMCTTCNEEHLFEDCPKNPASVYFVGERN--RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFN----SQTQLKIAQPLQSQLQQ

Query:  PMQVQPQST---------SHLENLMRELM
        P Q   Q T         S+LEN+M+E M
Subjt:  PMQVQPQST---------SHLENLMRELM

A0A6J1EQ90 uncharacterized protein LOC1114364117.7e-1640.16Show/hide
Query:  MSQVSTPMCTTCNEEHLFEDCPKNPASVYFVGERN-----RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKI-AQPLQSQL
        ++Q +   C  C EEH F+ CP NPAS+++VG +      + NP+SNT+NPGWR HPNFSW GQ +      P  +   P GF  Q QL   +Q + +Q 
Subjt:  MSQVSTPMCTTCNEEHLFEDCPKNPASVYFVGERN-----RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKI-AQPLQSQL

Query:  QQPMQVQPQSTSHLENLMRELM
        +   Q Q  S + +E+L++E M
Subjt:  QQPMQVQPQSTSHLENLMRELM

U5CZQ0 Uncharacterized protein2.5e-1447.62Show/hide
Query:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQP
        C  C + H FE+CP NPASV +VG +N     NPYSN++NP W+ HPNFSWGGQ  + S      +Q  P GF S T+     P
Subjt:  CTTCNEEHLFEDCPKNPASVYFVGERN---RVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAAGTTTCAACCCCCATGTGTACTACTTGCAATGAAGAGCACTTATTTGAAGATTGTCCTAAGAATCCAGCTTCAGTTTACTTTGTAGGTGAACGTAATAGAGT
AAATCCTTACTCCAACACTTTCAATCCAGGATGGAGACAACACCCTAACTTCTCTTGGGGAGGACAACATGTTACCATATCCAACAAAACCCCTTTTGTTAGGCAGGGAG
GACCACTAGGGTTTAATAGCCAAACTCAACTGAAGATTGCACAACCTTTGCAGTCGCAATTGCAGCAGCCGATGCAAGTGCAACCCCAATCGACCTCACACTTGGAGAAT
CTTATGAGGGAACTGATGACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCCAAGTTTCAACCCCCATGTGTACTACTTGCAATGAAGAGCACTTATTTGAAGATTGTCCTAAGAATCCAGCTTCAGTTTACTTTGTAGGTGAACGTAATAGAGT
AAATCCTTACTCCAACACTTTCAATCCAGGATGGAGACAACACCCTAACTTCTCTTGGGGAGGACAACATGTTACCATATCCAACAAAACCCCTTTTGTTAGGCAGGGAG
GACCACTAGGGTTTAATAGCCAAACTCAACTGAAGATTGCACAACCTTTGCAGTCGCAATTGCAGCAGCCGATGCAAGTGCAACCCCAATCGACCTCACACTTGGAGAAT
CTTATGAGGGAACTGATGACCTAG
Protein sequenceShow/hide protein sequence
MSQVSTPMCTTCNEEHLFEDCPKNPASVYFVGERNRVNPYSNTFNPGWRQHPNFSWGGQHVTISNKTPFVRQGGPLGFNSQTQLKIAQPLQSQLQQPMQVQPQSTSHLEN
LMRELMT