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Lag0018726 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018726
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr5:33402578..33403322
RNA-Seq ExpressionLag0018726
SyntenyLag0018726
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040367.1 gag/pol protein [Cucumis melo var. makuwa]8.3e-2172.97Show/hide
Query:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        Y   +  WLA QFQMKD G+ +YVLGI I+ DRKNKTLALSQATYID ML +YSMQNSK DLL F+HGVHLSKE
Subjt:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
KAA0051680.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-2171.05Show/hide
Query:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        + Y   +  WLA QFQMKD G+ +YVLGI I+ DRKNKTL LSQATYID ML +YSMQNSKNDLL F+HGVHLSKE
Subjt:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
KAA0060794.1 putative Integrase core domain [Cucumis melo var. makuwa]8.3e-2172.97Show/hide
Query:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        Y   +  WLA QFQMKD G+ +YV+GI I+ DRKNKTLALSQATYID ML +YSMQNSK DLL FKHGVHLSKE
Subjt:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
TYJ97931.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-2171.05Show/hide
Query:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        + Y   +  WLA QFQMKD G+ +YVLGI I+ DRKNKTL LSQATYID ML +YSMQNSKNDLL F+HGVHLSKE
Subjt:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
TYK11833.1 putative Integrase core domain [Cucumis melo var. makuwa]3.2e-2072.97Show/hide
Query:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        Y   I  WLA QFQMKD G+ +YVLGI I+ D KNKTLALSQATYID ML +YSMQNSK DLL F+HGVHLSKE
Subjt:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
TrEMBL top hitse value%identityAlignment
A0A5A7U951 Gag/pol protein2.4e-2171.05Show/hide
Query:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        + Y   +  WLA QFQMKD G+ +YVLGI I+ DRKNKTL LSQATYID ML +YSMQNSKNDLL F+HGVHLSKE
Subjt:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
A0A5A7V0F0 Putative Integrase core domain4.0e-2172.97Show/hide
Query:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        Y   +  WLA QFQMKD G+ +YV+GI I+ DRKNKTLALSQATYID ML +YSMQNSK DLL FKHGVHLSKE
Subjt:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
A0A5D3BH07 Gag/pol protein2.4e-2171.05Show/hide
Query:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        + Y   +  WLA QFQMKD G+ +YVLGI I+ DRKNKTL LSQATYID ML +YSMQNSKNDLL F+HGVHLSKE
Subjt:  MTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
A0A5D3CIT1 Putative Integrase core domain1.5e-2072.97Show/hide
Query:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        Y   I  WLA QFQMKD G+ +YVLGI I+ D KNKTLALSQATYID ML +YSMQNSK DLL F+HGVHLSKE
Subjt:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
A0A5D3DI92 Gag/pol protein4.0e-2172.97Show/hide
Query:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
        Y   +  WLA QFQMKD G+ +YVLGI I+ DRKNKTLALSQATYID ML +YSMQNSK DLL F+HGVHLSKE
Subjt:  YAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSKNDLLYFKHGVHLSKE
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-0441.18Show/hide
Query:  LADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSK
        L+  F MKD G  + +LG+ IV +R ++ L LSQ  YI+ +L +++M+N+K
Subjt:  LADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQYSMQNSK
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCGACGAGATTTATCAAAACAGAGAGTTGAATTTGAGATCAGAGGAAGAGAAAACTCCAAAAATAATTCCAAGAAGGGTTCTCTACTTTTCAGGCGTGGAATT
CATTTTGTCTAAGAAACGGTTTCCTGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGACCTATGCAATAGGGATTGTCAGATGGCTAGCGGACCAATTCCAAATGA
AAGATTTTGGAAAGGTCGAATATGTTCTTGGAATCCTAATAGTCTGGGATCGGAAGAACAAAACGCTAGCCCTGTCTCAAGCAACGTATATTGACAACATGTTGTCCCAA
TATTCGATGCAGAACTCCAAGAATGACTTATTGTATTTCAAGCATGGGGTTCACTTGTCTAAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCGACGAGATTTATCAAAACAGAGAGTTGAATTTGAGATCAGAGGAAGAGAAAACTCCAAAAATAATTCCAAGAAGGGTTCTCTACTTTTCAGGCGTGGAATT
CATTTTGTCTAAGAAACGGTTTCCTGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGACCTATGCAATAGGGATTGTCAGATGGCTAGCGGACCAATTCCAAATGA
AAGATTTTGGAAAGGTCGAATATGTTCTTGGAATCCTAATAGTCTGGGATCGGAAGAACAAAACGCTAGCCCTGTCTCAAGCAACGTATATTGACAACATGTTGTCCCAA
TATTCGATGCAGAACTCCAAGAATGACTTATTGTATTTCAAGCATGGGGTTCACTTGTCTAAGGAATAG
Protein sequenceShow/hide protein sequence
MAADEIYQNRELNLRSEEEKTPKIIPRRVLYFSGVEFILSKKRFPETPQEVEDMRRMTYAIGIVRWLADQFQMKDFGKVEYVLGILIVWDRKNKTLALSQATYIDNMLSQ
YSMQNSKNDLLYFKHGVHLSKE