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Lag0018733 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018733
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr5:33472051..33472797
RNA-Seq ExpressionLag0018733
SyntenyLag0018733
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1143.66Show/hide
Query:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE----------VSSLSL-AMAANFSNLGN
        +KRIK+I +KL  VS VV+ EDL+IYA NGLP+ YN F+T++RTR+  ++FEELHVL+ ++E AL +Q + +           SS SL + A+ F+N  N
Subjt:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE----------VSSLSL-AMAANFSNLGN

Query:  FGIGRGNSKPSGGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQ
        F  GRG      GR  GH          S   + GR G SSQ
Subjt:  FGIGRGNSKPSGGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQ

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-1143.66Show/hide
Query:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE----------VSSLSL-AMAANFSNLGN
        +KRIK+I +KL  VS VV+ EDL+IYA NGLP+ YN F+T++RTR+  ++FEELHVL+ ++E AL +Q + +           SS SL + A+ F+N  N
Subjt:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE----------VSSLSL-AMAANFSNLGN

Query:  FGIGRGNSKPSGGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQ
        F  GRG      GR  GH          S   + GR G SSQ
Subjt:  FGIGRGNSKPSGGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQ

TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]1.5e-1148.84Show/hide
Query:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE-VSSLSLAMAAN
        L +K+IK++ +KL   + +V+ EDLVIYA NGLP  YN F+T+++TR+Q +SF ELH+L+ S+E AL++Q + E +S    AM AN
Subjt:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE-VSSLSLAMAAN

XP_022157455.1 uncharacterized protein LOC111024149 [Momordica charantia]5.3e-1446.96Show/hide
Query:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE---VSSLSLAMAANFSNLG---NFGIGR
        +KRIK++ +KL  VS+VVD EDL+IY  NGLPS+YNVF+T++RTR+Q+++F+ELHVLM S+E ALD+QV+ +     + +L    N S++    N    R
Subjt:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE---VSSLSLAMAANFSNLG---NFGIGR

Query:  GNSKPSGGRSGGHSG
        G      GR+ G+ G
Subjt:  GNSKPSGGRSGGHSG

XP_022159298.1 uncharacterized protein LOC111025709 [Momordica charantia]1.3e-1241.84Show/hide
Query:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEY-EVSSLSLAMAANFSNLGNFGIGRGNS
        L ++RIK++ +KL  VS++VD EDL+IY  NGLP  +N F T++ TR+Q++SFEEL+VL+  +E A+D+Q ++ EV   S  + AN +  G       NS
Subjt:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEY-EVSSLSLAMAANFSNLGNFGIGRGNS

Query:  KPS----GGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQPFS
         P+     G +GG  G F    N S+ SS G +G  S+ FS
Subjt:  KPS----GGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQPFS

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X22.1e-1144.64Show/hide
Query:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQ-----------VEYEVSSLSLAMAANFSNLGN
        +KRIK+I +KL  VS  +++EDL+IYA NGLP+ YN F+T++RTR+Q ++FEELHVL+ ++E AL +Q           V    S   L+ A  F N  N
Subjt:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQ-----------VEYEVSSLSLAMAANFSNLGN

Query:  FGIGRGNSKPSG
        F  G G+ K  G
Subjt:  FGIGRGNSKPSG

A0A5D3CLI6 T4.52.1e-1144.64Show/hide
Query:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQ-----------VEYEVSSLSLAMAANFSNLGN
        +KRIK+I +KL  VS  +++EDL+IYA NGLP+ YN F+T++RTR+Q ++FEELHVL+ ++E AL +Q           V    S   L+ A  F N  N
Subjt:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQ-----------VEYEVSSLSLAMAANFSNLGN

Query:  FGIGRGNSKPSG
        F  G G+ K  G
Subjt:  FGIGRGNSKPSG

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein7.0e-1248.84Show/hide
Query:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE-VSSLSLAMAAN
        L +K+IK++ +KL   + +V+ EDLVIYA NGLP  YN F+T+++TR+Q +SF ELH+L+ S+E AL++Q + E +S    AM AN
Subjt:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE-VSSLSLAMAAN

A0A6J1DT57 uncharacterized protein LOC1110241492.6e-1446.96Show/hide
Query:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE---VSSLSLAMAANFSNLG---NFGIGR
        +KRIK++ +KL  VS+VVD EDL+IY  NGLPS+YNVF+T++RTR+Q+++F+ELHVLM S+E ALD+QV+ +     + +L    N S++    N    R
Subjt:  LKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYE---VSSLSLAMAANFSNLG---NFGIGR

Query:  GNSKPSGGRSGGHSG
        G      GR+ G+ G
Subjt:  GNSKPSGGRSGGHSG

A0A6J1DYF1 uncharacterized protein LOC1110257096.4e-1341.84Show/hide
Query:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEY-EVSSLSLAMAANFSNLGNFGIGRGNS
        L ++RIK++ +KL  VS++VD EDL+IY  NGLP  +N F T++ TR+Q++SFEEL+VL+  +E A+D+Q ++ EV   S  + AN +  G       NS
Subjt:  LLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEY-EVSSLSLAMAANFSNLGNFGIGRGNS

Query:  KPS----GGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQPFS
         P+     G +GG  G F    N S+ SS G +G  S+ FS
Subjt:  KPS----GGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQPFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACCTTGTCACCACCCGCTCTTGCGTACGCTATTGGTTGTGTTACTTCTCAAGAGGATTAAGGATATTGTTAACAAATTAGTTGTTGTTTCTATTGTTGTTGATCA
AGAGGATTTAGTGATTTACGCTTTCAATGGTCTTCCTTCTTCTTATAATGTCTTCAAGACCACTGTCCGCACTCGCACTCAAGCTATTTCTTTTGAAGAACTACATGTTT
TGATGACTTCTAAAGAACATGCCCTTGATCAACAAGTCGAATATGAAGTTTCTTCTCTATCTCTGGCCATGGCTGCAAATTTCTCTAATTTGGGCAATTTCGGAATTGGT
CGTGGTAATTCGAAACCCAGCGGTGGTAGATCTGGTGGCCATAGTGGTATCTTTCAGCAGCTTTTGAATTCTTCACAACCTTCTTCTGGTGGTCGCAGTGGTAATTCTTC
TCAACCTTTTTCCTCTCGAATTCACCTAAGGTTGTTTGTCAAATATGTCAACGTTTTGGCCATAATGCCTTGGATTGTTATCATTGATATGGTTACAATTTTCGTGGCCG
ACTTGCCCCCACACAACTGGCTGCTCTTGCTGATTCATCCAATGGAAATATTATGCCTTCTGGAAATGTCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAACCTTGTCACCACCCGCTCTTGCGTACGCTATTGGTTGTGTTACTTCTCAAGAGGATTAAGGATATTGTTAACAAATTAGTTGTTGTTTCTATTGTTGTTGATCA
AGAGGATTTAGTGATTTACGCTTTCAATGGTCTTCCTTCTTCTTATAATGTCTTCAAGACCACTGTCCGCACTCGCACTCAAGCTATTTCTTTTGAAGAACTACATGTTT
TGATGACTTCTAAAGAACATGCCCTTGATCAACAAGTCGAATATGAAGTTTCTTCTCTATCTCTGGCCATGGCTGCAAATTTCTCTAATTTGGGCAATTTCGGAATTGGT
CGTGGTAATTCGAAACCCAGCGGTGGTAGATCTGGTGGCCATAGTGGTATCTTTCAGCAGCTTTTGAATTCTTCACAACCTTCTTCTGGTGGTCGCAGTGGTAATTCTTC
TCAACCTTTTTCCTCTCGAATTCACCTAAGGTTGTTTGTCAAATATGTCAACGTTTTGGCCATAATGCCTTGGATTGTTATCATTGATATGGTTACAATTTTCGTGGCCG
ACTTGCCCCCACACAACTGGCTGCTCTTGCTGATTCATCCAATGGAAATATTATGCCTTCTGGAAATGTCTCTTTAG
Protein sequenceShow/hide protein sequence
MQPCHHPLLRTLLVVLLLKRIKDIVNKLVVVSIVVDQEDLVIYAFNGLPSSYNVFKTTVRTRTQAISFEELHVLMTSKEHALDQQVEYEVSSLSLAMAANFSNLGNFGIG
RGNSKPSGGRSGGHSGIFQQLLNSSQPSSGGRSGNSSQPFSSRIHLRLFVKYVNVLAIMPWIVIIDMVTIFVADLPPHNWLLLLIHPMEILCLLEMSL