; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018735 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018735
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:33530174..33532031
RNA-Seq ExpressionLag0018735
SyntenyLag0018735
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG73339.1 hypothetical protein EZV62_001918 [Acer yangbiense]2.4e-3136.68Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N  ++E +  V+E  + ++   A+++D CL  KVL  KKVN +AFRS+++ +W       +EV  DN+F   F  + ++ RV + GPW F KSLIV+  
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIK-AKDGRMACCSIQYEKLQIF
        PK       L F   AFW+Q+H+ P+  M   MAK + E +G + ++  D + CW G  MRV+V  DIS  L+R +++K  K   +   S++YE+L  F
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIK-AKDGRMACCSIQYEKLQIF

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.1e-4143.72Show/hide
Query:  WE--LSEREERVVEAVD-AKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMV
        WE   S  +E     +D  K + +A+ +  C+  K+  SK+++ +A RSVMKSVWR H +TR E  G N++ I FKS  EK RV+ SGPW+F+KSL+V+ 
Subjt:  WE--LSEREERVVEAVD-AKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMV

Query:  SPKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF
        SP   +Q  D+ F   AFWIQ+HN+P   ++ EMA +LG  +G +E+++ DG + W GP +RVRV  D+S  L+R +K+K  DG+   C ++YEKL  F
Subjt:  SPKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]4.0e-3942.49Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N+ L++ +E  +     K L + E + R    K+  SK+++ +AFRSVMKS+W+ H++T IE AG N++ I FKS  EK RV+ SGPWSF+ SL+V+ S
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYE
        P   DQ  D+ F   A WIQ+H +P   M  +MAK LG  +G +E++D +G   WTGP +RVRV  DIS   +R +K++  D + + C ++YE
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYE

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]1.9e-3337.88Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N+ L + EE  +   + K + + + I  C   K+  SK++  +AF SVMK VW+ H +TRIE AG N++ I FK+  EK+RV   GPW+FDKSL+++V 
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF
            ++  D+     AFW+Q+H +    MT +MAK LG  +G +E+VD      W  P + VRV  ++   L+R +K+K  DG+   C ++YE+L  F
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF

XP_022158119.1 uncharacterized protein LOC111024676, partial [Momordica charantia]1.5e-3045.95Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N+ L+  EE      + + + +AE I  C   K+  SK+++  A  SVMK VW+ H++TRIE AG N++ I FK+ VEK RV+ SGPW+FDKSL V+VS
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVD
        P   D+  D+ F+  AFW+Q+H +P  Y+T +MAKLLG+ +G +E+VD
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVD

TrEMBL top hitse value%identityAlignment
A0A5C7IW83 CCHC-type domain-containing protein1.1e-3136.68Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N  ++E +  V+E  + ++   A+++D CL  KVL  KKVN +AFRS+++ +W       +EV  DN+F   F  + ++ RV + GPW F KSLIV+  
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIK-AKDGRMACCSIQYEKLQIF
        PK       L F   AFW+Q+H+ P+  M   MAK + E +G + ++  D + CW G  MRV+V  DIS  L+R +++K  K   +   S++YE+L  F
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIK-AKDGRMACCSIQYEKLQIF

A0A6J1D765 uncharacterized protein LOC1110179025.5e-4243.72Show/hide
Query:  WE--LSEREERVVEAVD-AKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMV
        WE   S  +E     +D  K + +A+ +  C+  K+  SK+++ +A RSVMKSVWR H +TR E  G N++ I FKS  EK RV+ SGPW+F+KSL+V+ 
Subjt:  WE--LSEREERVVEAVD-AKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMV

Query:  SPKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF
        SP   +Q  D+ F   AFWIQ+HN+P   ++ EMA +LG  +G +E+++ DG + W GP +RVRV  D+S  L+R +K+K  DG+   C ++YEKL  F
Subjt:  SPKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF

A0A6J1DP89 uncharacterized protein LOC1110229322.0e-3942.49Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N+ L++ +E  +     K L + E + R    K+  SK+++ +AFRSVMKS+W+ H++T IE AG N++ I FKS  EK RV+ SGPWSF+ SL+V+ S
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYE
        P   DQ  D+ F   A WIQ+H +P   M  +MAK LG  +G +E++D +G   WTGP +RVRV  DIS   +R +K++  D + + C ++YE
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYE

A0A6J1DVS4 uncharacterized protein LOC1110235559.4e-3437.88Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N+ L + EE  +   + K + + + I  C   K+  SK++  +AF SVMK VW+ H +TRIE AG N++ I FK+  EK+RV   GPW+FDKSL+++V 
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF
            ++  D+     AFW+Q+H +    MT +MAK LG  +G +E+VD      W  P + VRV  ++   L+R +K+K  DG+   C ++YE+L  F
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIF

A0A6J1DYG3 uncharacterized protein LOC1110246767.4e-3145.95Show/hide
Query:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS
        +N+ L+  EE      + + + +AE I  C   K+  SK+++  A  SVMK VW+ H++TRIE AG N++ I FK+ VEK RV+ SGPW+FDKSL V+VS
Subjt:  KNWELSEREERVVEAVDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVS

Query:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVD
        P   D+  D+ F+  AFW+Q+H +P  Y+T +MAKLLG+ +G +E+VD
Subjt:  PKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVGSIEDVD

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.3e-1145.59Show/hide
Query:  DNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWFPSLHYKL
        DN     +  NP  H R KHI I +HF RE+V    +C+ ++P+E+QLADI TKP P+  F  L  KL
Subjt:  DNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWFPSLHYKL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-0436.92Show/hide
Query:  MLLCDNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWF
        ++ CD+ SA  L  N + H+R KHI + +H+IRE V  + L +  + + +  AD+LTK  P   F
Subjt:  MLLCDNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-1352.7Show/hide
Query:  MLLCDNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWFPSLHYKLTI
        ++ CDNV ATYL ANPV HSR KHI ID+HFIR +V    L +  V + DQLAD LTKP   T F +   K+ +
Subjt:  MLLCDNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWFPSLHYKLTI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.7e-1350Show/hide
Query:  MLLCDNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWFPSLHYKLTI
        ++ CDNV ATYL ANPV HSR KHI +D+HFIR +V    L +  V + DQLAD LTKP     F +   K+ +
Subjt:  MLLCDNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWFPSLHYKLTI

Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding9.0e-0528.99Show/hide
Query:  FKSKVEKVRVMKSGPWSFDKSLIVMVSPKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVG
        F+S+     +++ GPWSF+  + V+   +      D  FK   FWIQ+  +P+ ++T  +   +GE +G
Subjt:  FKSKVEKVRVMKSGPWSFDKSLIVMVSPKENDQIGDLTFKDEAFWIQLHNVPMNYMTVEMAKLLGEVVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTGTGTGATAATGTTAGTGCAACCTATTTAGTTGCAAATCCAGTTCTTCATAGTCGTTGCAAGCATATCAAGATAGATCACCACTTCATTAGGGAAAAGGTCAT
GCGTAAACAACTTTGTATTCGCTTTGTTCCTTCTGAAGATCAACTGGCAGATATCCTAACAAAACCATTCCCTTCCACTTGGTTTCCTAGTTTGCATTACAAGCTCACAA
TACATGCACAATTGATTTTCCTCTCTCACTCTGTAATCTTTGATGATCTAAGCCTCGTCGGTCTGAAGAATTGGGAACTGTCTGAGAGAGAGGAGAGGGTGGTGGAAGCG
GTGGATGCCAAGGTTCTTTTTTCAGCTGAGGAGATTGATAGATGCTTGGCTGTCAAGGTACTGGCGAGTAAAAAGGTTAATGGGGACGCCTTTAGATCGGTGATGAAGTC
GGTGTGGAGAGCGCATCAAAACACAAGAATTGAGGTGGCTGGGGACAATGTGTTCTACATCCAATTTAAGTCCAAGGTGGAGAAAGTGCGAGTGATGAAATCTGGGCCTT
GGTCTTTTGATAAATCCTTGATTGTGATGGTCTCCCCTAAAGAAAATGATCAAATAGGTGACCTAACCTTTAAGGATGAGGCTTTCTGGATTCAGCTACATAATGTCCCG
ATGAATTACATGACAGTGGAAATGGCTAAACTGTTAGGGGAGGTTGTAGGTTCAATCGAGGATGTGGATTGGGATGGGGAGAACTGCTGGACAGGGCCGGTGATGAGGGT
TAGAGTGGCCTTTGACATCTCAATTCTGTTACAAAGATGTGTGAAAATTAAGGCGAAAGATGGGAGGATGGCGTGCTGTTCGATTCAATATGAGAAACTCCAGATTTTTG
CTTTGATTGTGGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCTGTGTGATAATGTTAGTGCAACCTATTTAGTTGCAAATCCAGTTCTTCATAGTCGTTGCAAGCATATCAAGATAGATCACCACTTCATTAGGGAAAAGGTCAT
GCGTAAACAACTTTGTATTCGCTTTGTTCCTTCTGAAGATCAACTGGCAGATATCCTAACAAAACCATTCCCTTCCACTTGGTTTCCTAGTTTGCATTACAAGCTCACAA
TACATGCACAATTGATTTTCCTCTCTCACTCTGTAATCTTTGATGATCTAAGCCTCGTCGGTCTGAAGAATTGGGAACTGTCTGAGAGAGAGGAGAGGGTGGTGGAAGCG
GTGGATGCCAAGGTTCTTTTTTCAGCTGAGGAGATTGATAGATGCTTGGCTGTCAAGGTACTGGCGAGTAAAAAGGTTAATGGGGACGCCTTTAGATCGGTGATGAAGTC
GGTGTGGAGAGCGCATCAAAACACAAGAATTGAGGTGGCTGGGGACAATGTGTTCTACATCCAATTTAAGTCCAAGGTGGAGAAAGTGCGAGTGATGAAATCTGGGCCTT
GGTCTTTTGATAAATCCTTGATTGTGATGGTCTCCCCTAAAGAAAATGATCAAATAGGTGACCTAACCTTTAAGGATGAGGCTTTCTGGATTCAGCTACATAATGTCCCG
ATGAATTACATGACAGTGGAAATGGCTAAACTGTTAGGGGAGGTTGTAGGTTCAATCGAGGATGTGGATTGGGATGGGGAGAACTGCTGGACAGGGCCGGTGATGAGGGT
TAGAGTGGCCTTTGACATCTCAATTCTGTTACAAAGATGTGTGAAAATTAAGGCGAAAGATGGGAGGATGGCGTGCTGTTCGATTCAATATGAGAAACTCCAGATTTTTG
CTTTGATTGTGGTATAA
Protein sequenceShow/hide protein sequence
MLLCDNVSATYLVANPVLHSRCKHIKIDHHFIREKVMRKQLCIRFVPSEDQLADILTKPFPSTWFPSLHYKLTIHAQLIFLSHSVIFDDLSLVGLKNWELSEREERVVEA
VDAKVLFSAEEIDRCLAVKVLASKKVNGDAFRSVMKSVWRAHQNTRIEVAGDNVFYIQFKSKVEKVRVMKSGPWSFDKSLIVMVSPKENDQIGDLTFKDEAFWIQLHNVP
MNYMTVEMAKLLGEVVGSIEDVDWDGENCWTGPVMRVRVAFDISILLQRCVKIKAKDGRMACCSIQYEKLQIFALIVV