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Lag0018736 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018736
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:33532118..33533021
RNA-Seq ExpressionLag0018736
SyntenyLag0018736
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8399913.1 hypothetical protein HHK36_015783 [Tetracentron sinense]1.5e-1133.87Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        ++N D AT+ E+ +S IG I+ N KGEVM  + +RI    +  V+EAMA +  +  A+  GF  +++E DS +V+    S+  D+  VG + E+++ +  
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIADW
         F  C+F + +R  N+V H +A +
Subjt:  GFLSCSFQWCQRSENRVAHEIADW

XP_023881690.1 uncharacterized protein LOC111994061 [Quercus suber]8.5e-1236.89Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        ++N D A +  +NSS +G I+RN  GEVM  +  R   V N +  EA+A + ++  A +AGF+ LV+E D+A V+  + S   D   +G + ++I+ ++ 
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIA
         F SC+F   +RS N VAH +A
Subjt:  GFLSCSFQWCQRSENRVAHEIA

XP_023905314.1 uncharacterized protein LOC112017083 [Quercus suber]1.0e-1237.7Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        ++N + A +  +NSS +G I+RNG GEVM  +  R   V N +  EA+A + ++  A +AGF+ LV+E D+A V+  + S   D   +G + ++I+ ++ 
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIA
        GF SC+F   +RS N VAH +A
Subjt:  GFLSCSFQWCQRSENRVAHEIA

XP_030942039.1 uncharacterized protein LOC115967096 [Quercus lobata]1.9e-1136.07Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        ++N D A + E  +S  GA++RN KGEVM  +  R   VR+ + +E MA + ++  A +AGF  +V+E D+A V+ ++     D+  +G++ E+I  ++ 
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIA
        GF S S+   +RS N VAH +A
Subjt:  GFLSCSFQWCQRSENRVAHEIA

XP_030969974.1 uncharacterized protein LOC115990267 [Quercus lobata]2.5e-1131.15Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        + N D A ++ESN + IG ++R+ +G V+  + E++  V++ +V+EA+A++ ++R A E  F  +++E DS  VV  ++        +G + E+++ +S+
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIA
           SC F   +R  N+VAH +A
Subjt:  GFLSCSFQWCQRSENRVAHEIA

TrEMBL top hitse value%identityAlignment
A0A2N9EYC3 Reverse transcriptase domain-containing protein3.0e-1036.29Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVV--ALLRSELADIFEVGVLAEEIQQI
        +VN D A + + N + IG I+RN +GEVM  + +RI    +V+ +EA A +++++ AK++GF+ + +E DS  +V   LL +  + I+  G + E+I+QI
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVV--ALLRSELADIFEVGVLAEEIQQI

Query:  SRGFLSCSFQWCQRSENRVAHEIA
        +RG  S  F   +R  N +AH +A
Subjt:  SRGFLSCSFQWCQRSENRVAHEIA

A0A2N9H5A9 Uncharacterized protein1.9e-0931.97Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        +VN D A +++SN + +G I+RN +GEVM ++ +++    +V+ +EA A +++++ AK+ GF  + +E DS  +V  L+         G + ++I QI++
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIA
        G  S  F   +R  N +AH +A
Subjt:  GFLSCSFQWCQRSENRVAHEIA

A0A2N9HF86 RNase H domain-containing protein1.1e-0934.43Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        +VN D A + ES+ + IG I+RN +GEVM ++  RI    +++ +EA A +++ +LA + GF  + +E DS  +V  LR+        G L  + +  + 
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIA
         FLS  F   +R  N VAH +A
Subjt:  GFLSCSFQWCQRSENRVAHEIA

A0A2N9HG14 Uncharacterized protein1.9e-0934.43Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR
        +VN D A +R +N + +G I+RN +GEVM ++ +R+    +++ +EA A + +++ AK+ G + + +E DS  VV  L      I   G + E+I+ I+R
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISR

Query:  GFLSCSFQWCQRSENRVAHEIA
        G  S  FQ  +R  N +AH +A
Subjt:  GFLSCSFQWCQRSENRVAHEIA

A0A2N9IYC8 Reverse transcriptase domain-containing protein6.6e-1036.29Show/hide
Query:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVV--ALLRSELADIFEVGVLAEEIQQI
        +VN D A + + N + IG I+RN +GEVM  + +RI    +V+ +EA A +++++ AK+ GF+ + +E DS  +V   LL +  + I+  G + E+I+QI
Subjt:  EVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVV--ALLRSELADIFEVGVLAEEIQQI

Query:  SRGFLSCSFQWCQRSENRVAHEIA
        +RG  S  F   +R  N +AH +A
Subjt:  SRGFLSCSFQWCQRSENRVAHEIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0429.75Show/hide
Query:  NTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIF-EVGVLAEEIQQISRG
        NTD     E+    IG ILRN  G V+      +   +NV   E  A++ ++       + R++ E D+  +V LL S+  D +  +    E+IQQ+   
Subjt:  NTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIF-EVGVLAEEIQQISRG

Query:  FLSCSFQWCQRSENRVAHEIA
        F    F++  R  N+VA  IA
Subjt:  FLSCSFQWCQRSENRVAHEIA

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0631.09Show/hide
Query:  TDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISRGFL
        TD A   E+     G ++RN      L      R VR   + EA+A+  +++ A+  G  +L +  DS +++  + SE       G++  +I  +S GF 
Subjt:  TDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSARVVALLRSELADIFEVGVLAEEIQQISRGFL

Query:  SCSFQWCQRSENRVAHEIA
          SF +  RSENRVA E+A
Subjt:  SCSFQWCQRSENRVAHEIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCTTAGAAGACCGATGGGATTGGGAGGATCTGTGAACAAATTAGGGGGTGGGTGGAGAAGGGAGGGAAGAGGGAACGAAGGCGAGGTTGGGGAAAGGAGTAGGGA
TAATGTTGAGGAGGGAAGTGTGGAGAAGGAGGTGGATCGGGGTTTGAGCCTAATTAGGGAAATGGAAGGAGATAAGGTGCAAAAGGAGAGTATGGGGAAGGAGTGTCCAG
TGGAAAGAAGGGATGAGGGTGGGAGTGTGGGGAGGAGCTTGGAGGGGCGGGGAAAAAAGTGGAAGAGACGTGAGAGGGATGAGGTAGTGGGAATGGATTGTGGGAGCTCA
ATCCAGTTGGGTAAGCAGGGCCCCATGATAGCGGAGGGTGGGACTGATGAAGGGGTGGAGGAGCGAGTGAGGAAGAAGGGGAGGGAGGAGGTTGTGGTGATCTTGGAAGC
GGAGGTGAATACAGATTGCGCAACATATAGAGAGTCTAATTCGAGCAGTATTGGTGCAATTCTGAGAAATGGAAAAGGGGAAGTGATGCTTACAGTGATGGAGAGGATTC
GGTGCGTACGAAATGTGGATGTACTGGAGGCTATGGCTGTCCAGAACAGTATGCGGCTGGCCAAGGAGGCTGGCTTCTTGAGATTGGTGGTGGAATTGGACTCGGCTCGG
GTGGTGGCTCTGCTTCGATCGGAGTTGGCTGATATTTTCGAGGTAGGTGTTTTGGCGGAGGAGATTCAACAGATCTCGAGGGGGTTTCTTTCCTGTTCGTTTCAATGGTG
TCAAAGATCTGAGAATAGAGTGGCCCATGAGATCGCAGACTGGCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCTTAGAAGACCGATGGGATTGGGAGGATCTGTGAACAAATTAGGGGGTGGGTGGAGAAGGGAGGGAAGAGGGAACGAAGGCGAGGTTGGGGAAAGGAGTAGGGA
TAATGTTGAGGAGGGAAGTGTGGAGAAGGAGGTGGATCGGGGTTTGAGCCTAATTAGGGAAATGGAAGGAGATAAGGTGCAAAAGGAGAGTATGGGGAAGGAGTGTCCAG
TGGAAAGAAGGGATGAGGGTGGGAGTGTGGGGAGGAGCTTGGAGGGGCGGGGAAAAAAGTGGAAGAGACGTGAGAGGGATGAGGTAGTGGGAATGGATTGTGGGAGCTCA
ATCCAGTTGGGTAAGCAGGGCCCCATGATAGCGGAGGGTGGGACTGATGAAGGGGTGGAGGAGCGAGTGAGGAAGAAGGGGAGGGAGGAGGTTGTGGTGATCTTGGAAGC
GGAGGTGAATACAGATTGCGCAACATATAGAGAGTCTAATTCGAGCAGTATTGGTGCAATTCTGAGAAATGGAAAAGGGGAAGTGATGCTTACAGTGATGGAGAGGATTC
GGTGCGTACGAAATGTGGATGTACTGGAGGCTATGGCTGTCCAGAACAGTATGCGGCTGGCCAAGGAGGCTGGCTTCTTGAGATTGGTGGTGGAATTGGACTCGGCTCGG
GTGGTGGCTCTGCTTCGATCGGAGTTGGCTGATATTTTCGAGGTAGGTGTTTTGGCGGAGGAGATTCAACAGATCTCGAGGGGGTTTCTTTCCTGTTCGTTTCAATGGTG
TCAAAGATCTGAGAATAGAGTGGCCCATGAGATCGCAGACTGGCTATAG
Protein sequenceShow/hide protein sequence
MPLRRPMGLGGSVNKLGGGWRREGRGNEGEVGERSRDNVEEGSVEKEVDRGLSLIREMEGDKVQKESMGKECPVERRDEGGSVGRSLEGRGKKWKRRERDEVVGMDCGSS
IQLGKQGPMIAEGGTDEGVEERVRKKGREEVVVILEAEVNTDCATYRESNSSSIGAILRNGKGEVMLTVMERIRCVRNVDVLEAMAVQNSMRLAKEAGFLRLVVELDSAR
VVALLRSELADIFEVGVLAEEIQQISRGFLSCSFQWCQRSENRVAHEIADWL