; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018753 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018753
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr5:33842935..33846241
RNA-Seq ExpressionLag0018753
SyntenyLag0018753
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]9.5e-7470.98Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG
        +K ++E+D +I  LK Q++ +   ESSQT V+K  DKGK +VQ++QP Q S S+A LS+QQLQDMITN IRAQYGGP+Q S +YSKPY+KRIDNLRMP+G
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG

Query:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        YQPPKF QFDGK NPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYT+LEPESI SWE+ E+ FLN FYSTRRTVS+ ELTNTKQ+K
Subjt:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]3.6e-7370.47Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG
        +K ++E+D +I  LK Q++ +   ESSQT V+K  DKGK +VQ++QP Q S S+A LS+QQLQDMIT+ IRAQYGGP+Q S +YSKPY+KRIDNLRMP+G
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG

Query:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        YQPPKF QFDGK NPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYT+LEPESI SWE+ E+ FLN FYSTRRTVS+ ELTNTKQ+K
Subjt:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.6e-7370.47Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG
        +K ++E+D +I  LK Q++ +   ESSQT V+K  DKGK +VQ++QP Q S S+A LS+QQLQDMIT+ IRAQYGGP+Q S +YSKPY+KRIDNLRMP+G
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG

Query:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        YQPPKF QFDGK NPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYT+LEPESI SWE+ E+ FLN FYSTRRTVS+ ELTNTKQ+K
Subjt:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.6e-7370.47Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG
        +K ++E+D +I  LK Q++ +   ESSQT V+K  DKGK +VQ++QP Q S S+A LS+QQLQDMIT+ IRAQYGGP+Q S +YSKPY+KRIDNLRMP+G
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG

Query:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        YQPPKF QFDGK NPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYT+LEPESI SWE+ E+ FLN FYSTRRTVS+ ELTNTKQ+K
Subjt:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]9.5e-7470.98Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG
        +K ++E+D +I  LK Q++ +   ESSQT V+K  DKGK +VQ++QP Q S S+A LS+QQLQDMITN IRAQYGGP+Q S +YSKPY+KRIDNLRMP+G
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQP-QCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIG

Query:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        YQPPKF QFDGK NPKQH+AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYT+LEPESI SWE+ E+ FLN FYSTRRTVS+ ELTNTKQ+K
Subjt:  YQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H9.6e-7270.83Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY
        +KA+EE+D +I  LK+ IE++   ESS T  IK+ +KGK I+Q+ QPQ S SIA LS+QQLQ+MI N I+ QYGGP Q   LYSKPY+KRIDN+RMP GY
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY

Query:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        QPPKF QFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT+LEPESI+SWE+ ER FLN FYSTRR VS+ ELT TKQ+K
Subjt:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

A0A5A7UUI7 Ty3-gypsy retrotransposon protein8.1e-7168.75Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY
        +K +EE+D +I  LK+ IE++   ESS    +K+ DKGK ++Q+ QPQ S SIA LS+QQLQ+MI + I+ QYGGP Q   LYSKPY+KRIDNLRMP GY
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY

Query:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        QPPKF QFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWY +LEPESI++WE+ ER FLN FYSTRR VS+ ELTNT+QQK
Subjt:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

A0A5A7UXF0 Ty3-gypsy retrotransposon protein3.7e-7168.75Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY
        +K +EE+D +I  LK+ IE++   ESS   ++K+ DKGK ++Q+ QPQ S SIA LS+QQLQ+MI + I+ QYGGP Q   LYSKPY+KRIDNLRMP GY
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY

Query:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        QPPKF QFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWY +LEPESI++WE+ ER FLN FYSTRR VS+ ELTNT+QQK
Subjt:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

A0A5A7V2W9 Ty3-gypsy retrotransposon protein1.6e-7169.27Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY
        +K +EE+D +I  LK+ IE+    ESS    +K+ DKGK ++Q+ QPQ S SIA LS+QQLQ+MI N I+ QYGGPTQ   LYSKPY+KRIDNLRMP GY
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY

Query:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        QPPKF QFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFV+TLKGNAFDWY +LEPESI++WE+ ER FLN FYSTRR VS+ ELTNT+QQK
Subjt:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

A0A5D3D4X3 Ty3-gypsy retrotransposon protein8.1e-7168.75Show/hide
Query:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY
        +K +EE+D +I  LK+ IE++   ESS    +K+ DKGK ++Q+ QPQ S SIA LS+QQLQ+MI + I+ QYGGP Q   LYSKPY+KRIDNLRMP GY
Subjt:  VKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYSKRIDNLRMPIGY

Query:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK
        QPPKF QFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWY +LEPESI++WE+ ER FLN FYSTRR VS+ ELTNT+QQK
Subjt:  QPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRRTVSIFELTNTKQQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGACTATGAACGACCACCGCCGCCGCCTCCTCCGTTTGAAGCTGCTGAGAATGATTTTTGGAGTGCCGCCGGTTGGGTTTTCGATGTCGATCTCCGCAGC
TCTCATCTCTCGACGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAACGAGCTTCCTCAAGCGATG
GACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTGTTTGTTCTTCAGAAGAATTTGGATTCTTCTAGATGGATTGAGGTAGACTTCAAT
CTTCAAGGACAACCTGCAAAAACCAACGTCATCTTTCTGCTCCCTCACTCACGCCATTCCATACACACAAAACCAAGGGCTTCTTCTAGTTCTCATGTTAAGGCG
ATTGAAGAAAAAGATTCTCAAATTGAACACCTCAAGAGTCAGATTGAGAACCAACATATCGTTGAATCAAGTCAAACGCAAGTCATAAAAAGTCATGATAAAGGA
AAGACTATAGTGCAAGATGATCAACCACAATGTTCTGCTTCAATCGCTCCACTATCCATCCAACAACTCCAAGATATGATCACAAACTGTATTAGAGCTCAGTAC
GGTGGACCTACTCAAGATTCCCTTTTGTATTCCAAACCTTATTCTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAACCACCAAAGTTTCACCAGTTT
GACGGGAAAAGCAACCCTAAACAACATATTGCCCACTTCGTCGAGACATGCGAGAATGCTGGTACTCGAGGAGATCTACTAGTCAAGCAGTTCGTTCGAACACTT
AAAGGAAATGCTTTTGACTGGTACACTAATCTAGAACCTGAGTCAATAAACAGTTGGGAGGAATTCGAAAGAGTGTTTTTGAATCACTTCTACAGCACTAGACGA
ACCGTTAGCATATTCGAGCTCACCAACACTAAACAACAAAAAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACGACTATGAACGACCACCGCCGCCGCCTCCTCCGTTTGAAGCTGCTGAGAATGATTTTTGGAGTGCCGCCGGTTGGGTTTTCGATGTCGATCTCCGCAGC
TCTCATCTCTCGACGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGGCTATGTCTATGGACATAACCGAAAATACCGTTAACGAGCTTCCTCAAGCGATG
GACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTGTTTGTTCTTCAGAAGAATTTGGATTCTTCTAGATGGATTGAGGTAGACTTCAAT
CTTCAAGGACAACCTGCAAAAACCAACGTCATCTTTCTGCTCCCTCACTCACGCCATTCCATACACACAAAACCAAGGGCTTCTTCTAGTTCTCATGTTAAGGCG
ATTGAAGAAAAAGATTCTCAAATTGAACACCTCAAGAGTCAGATTGAGAACCAACATATCGTTGAATCAAGTCAAACGCAAGTCATAAAAAGTCATGATAAAGGA
AAGACTATAGTGCAAGATGATCAACCACAATGTTCTGCTTCAATCGCTCCACTATCCATCCAACAACTCCAAGATATGATCACAAACTGTATTAGAGCTCAGTAC
GGTGGACCTACTCAAGATTCCCTTTTGTATTCCAAACCTTATTCTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAACCACCAAAGTTTCACCAGTTT
GACGGGAAAAGCAACCCTAAACAACATATTGCCCACTTCGTCGAGACATGCGAGAATGCTGGTACTCGAGGAGATCTACTAGTCAAGCAGTTCGTTCGAACACTT
AAAGGAAATGCTTTTGACTGGTACACTAATCTAGAACCTGAGTCAATAAACAGTTGGGAGGAATTCGAAAGAGTGTTTTTGAATCACTTCTACAGCACTAGACGA
ACCGTTAGCATATTCGAGCTCACCAACACTAAACAACAAAAAAGGTGA
Protein sequenceShow/hide protein sequence
MNDYERPPPPPPPFEAAENDFWSAAGWVFDVDLRSSHLSTMAKNRNKKKRSGAMSMDITENTVNELPQAMDVSESAVHKPASGAPNLFVLQKNLDSSRWIEVDFN
LQGQPAKTNVIFLLPHSRHSIHTKPRASSSSHVKAIEEKDSQIEHLKSQIENQHIVESSQTQVIKSHDKGKTIVQDDQPQCSASIAPLSIQQLQDMITNCIRAQY
GGPTQDSLLYSKPYSKRIDNLRMPIGYQPPKFHQFDGKSNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTNLEPESINSWEEFERVFLNHFYSTRR
TVSIFELTNTKQQKR