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Lag0018768 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018768
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr5:34154841..34155278
RNA-Seq ExpressionLag0018768
SyntenyLag0018768
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]1.6e-3663.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]5.9e-3662.59Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KLF F+DG+  CP            TS    +  PP     Q NPLYEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.6e-3663.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.6e-3663.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]1.6e-3663.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X27.5e-3763.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X37.5e-3763.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X17.5e-3763.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

A0A5D3CLI6 T4.57.5e-3763.31Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKA KL+ FIDG+  CPP+  +SS+ S+          PP     Q NP YEDW+AKDQA
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        LMT+IN TLSP ALAY VG TSS+Q W+VL K YSS S+
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

A0A6J1D9L6 uncharacterized protein LOC1110188923.2e-3560.28Show/hide
Query:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVS--QINPLYEDWVAKD
        T+  KD HSPIFLLSNICNL+S+RLDST+F+LWKFQL +ILKA KLF FIDGS   P + ++SS         +  ++ P  T S   INP +EDW+AKD
Subjt:  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVS--QINPLYEDWVAKD

Query:  QALMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK
        QALMTLIN TLS  ALAY V   +S+Q WEVLEKHYSS+S+
Subjt:  QALMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSSK

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.9e-0627.83Show/hide
Query:  RLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQALMTLINDTLSPAALAYDVGCTSS
        +L STN+++W  Q+ ++    +L  F+DGST  PP  I + A               AP   ++NP Y  W  +D+ + + +   +S +        T++
Subjt:  RLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQALMTLINDTLSPAALAYDVGCTSS

Query:  QQAWEVLEKHYSSSS
         Q WE L K Y++ S
Subjt:  QQAWEVLEKHYSSSS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.9e-0626.81Show/hide
Query:  THSPIFLLSNICNLISL------RLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA
        TH+   +L N  N++++      +L STN+++W  Q+ ++    +L  F+DGST  PP  I + A                  V ++NP Y  W  +D+ 
Subjt:  THSPIFLLSNICNLISL------RLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQA

Query:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSS
        + + I   +S +        T++ Q WE L K Y++ S
Subjt:  LMTLINDTLSPAALAYDVGCTSSQQAWEVLEKHYSSSS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCTATCGATAAAGACACTCACTCACCTATTTTCTTACTCTCCAACATTTGTAATCTAATCTCTCTACGACTTGATTCAACGAATTTTGTTCTCTGGAAATTCCA
ATTGCAGTCAATTTTGAAAGCCCGCAAATTATTTAGGTTCATTGATGGATCTACAGTATGTCCTCCAAAGATGATTTCATCATCTGCTTTGTCTTCCTCAACCTCTGTTG
ATGCTGCAGCTGATACACCTCCTGCTCCTACTGTTTCTCAAATTAATCCCCTCTATGAAGATTGGGTTGCAAAAGACCAAGCCTTAATGACGTTGATCAACGACACACTC
TCACCGGCAGCGTTGGCCTACGATGTTGGTTGTACATCATCCCAACAAGCTTGGGAAGTCTTGGAGAAGCACTATTCCTCGAGTTCAAAACCAACATTGTCAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCTATCGATAAAGACACTCACTCACCTATTTTCTTACTCTCCAACATTTGTAATCTAATCTCTCTACGACTTGATTCAACGAATTTTGTTCTCTGGAAATTCCA
ATTGCAGTCAATTTTGAAAGCCCGCAAATTATTTAGGTTCATTGATGGATCTACAGTATGTCCTCCAAAGATGATTTCATCATCTGCTTTGTCTTCCTCAACCTCTGTTG
ATGCTGCAGCTGATACACCTCCTGCTCCTACTGTTTCTCAAATTAATCCCCTCTATGAAGATTGGGTTGCAAAAGACCAAGCCTTAATGACGTTGATCAACGACACACTC
TCACCGGCAGCGTTGGCCTACGATGTTGGTTGTACATCATCCCAACAAGCTTGGGAAGTCTTGGAGAAGCACTATTCCTCGAGTTCAAAACCAACATTGTCAATCTAA
Protein sequenceShow/hide protein sequence
MTSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKARKLFRFIDGSTVCPPKMISSSALSSSTSVDAAADTPPAPTVSQINPLYEDWVAKDQALMTLINDTL
SPAALAYDVGCTSSQQAWEVLEKHYSSSSKPTLSI