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Lag0018772 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018772
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr5:34179756..34180061
RNA-Seq ExpressionLag0018772
SyntenyLag0018772
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005622 - intracellular (cellular component)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3457419.1 reverse transcriptase [Gossypium australe]2.0e-0650Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
        M L+CWNVRG G+PRA++ LRH +++HNP +VF++E+K   KR+  ++R+
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
KAA3469953.1 reverse transcriptase [Gossypium australe]7.6e-0651.02Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKR
        M ++CWNVRG GNPRA+R LR  +++HNP +VF +E+K   KR+  ++R
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKR
KAA3476158.1 expansin-A1-like [Gossypium australe]2.0e-0654Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
        M  +CWNVRG G+PRA+R LRH I++HNP +VF+IE+K   KR+   ++S
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
KAA3485548.1 reverse transcriptase [Gossypium australe]1.5e-0652Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
        M  +CWNVRG GNPRA+R LRH I++HNP  +F++E+K   +R+   +RS
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
XP_012477795.1 PREDICTED: uncharacterized protein LOC105793429 [Gossypium raimondii]2.0e-0634.88Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRSWDSTTFSALAVKEKVEGLFCYGKTKPIPISIPSLEV
        M ++CWNVRG G+PRA+R LR  ++++NP +VF++E+K   KR+  ++R    T    + V     G+ C    + + I + SL +
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRSWDSTTFSALAVKEKVEGLFCYGKTKPIPISIPSLEV
TrEMBL top hitse value%identityAlignment
A0A5B6UI00 Reverse transcriptase9.6e-0750Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
        M L+CWNVRG G+PRA++ LRH +++HNP +VF++E+K   KR+  ++R+
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
A0A5B6VAT3 Reverse transcriptase3.7e-0650Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRSWD
        M  +CWNVRG G+PRA+R LRH I++H P  VF++E+K   +R+   +RS D
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRSWD
A0A5B6VDR0 Reverse transcriptase3.7e-0653.06Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKR
        M  +CWNVRG G+PRA+R LRH I++HNP LVF++E+K    R+  ++R
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKR
A0A5B6W4K3 Expansin-A1-like9.6e-0754Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
        M  +CWNVRG G+PRA+R LRH I++HNP +VF+IE+K   KR+   ++S
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
A0A5B6WVT7 Reverse transcriptase7.4e-0752Show/hide
Query:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
        M  +CWNVRG GNPRA+R LRH I++HNP  +F++E+K   +R+   +RS
Subjt:  MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTCTTATGTTGGAACGTTCGAGGGGCGGGGAATCCTCGAGCGCTCCGAGCTTTGCGACATGAGATCCGCAAACACAACCCCATTTTGGTTTTCATCATAGAATC
TAAGTGTCTAGCAAAGCGGCTGAGGGTCTTAAAAAGAAGCTGGGATTCAACAACATTTTCAGCATTAGCAGTGAAGGAAAAAGTGGAGGGCTTATTTTGCTATGGCAAGA
CCAAGCCAATACCAATATCAATTCCTTCTCTAGAGGTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATCTCTTATGTTGGAACGTTCGAGGGGCGGGGAATCCTCGAGCGCTCCGAGCTTTGCGACATGAGATCCGCAAACACAACCCCATTTTGGTTTTCATCATAGAATC
TAAGTGTCTAGCAAAGCGGCTGAGGGTCTTAAAAAGAAGCTGGGATTCAACAACATTTTCAGCATTAGCAGTGAAGGAAAAAGTGGAGGGCTTATTTTGCTATGGCAAGA
CCAAGCCAATACCAATATCAATTCCTTCTCTAGAGGTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAATAATATAG
Protein sequenceShow/hide protein sequence
MNLLCWNVRGAGNPRALRALRHEIRKHNPILVFIIESKCLAKRLRVLKRSWDSTTFSALAVKEKVEGLFCYGKTKPIPISIPSLEVMWTFPNRKRTGQVII