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Lag0018784 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018784
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:34299519..34300570
RNA-Seq ExpressionLag0018784
SyntenyLag0018784
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]1.6e-3737.77Show/hide
Query:  WRSWKLTEEE--AEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI
        W ++ LTEEE     V P  V   L EG+   C++GK+LS + VN++  RNVM   W+  G  ++    +NLF  QF S +EK RV    PW F+++L++
Subjt:  WRSWKLTEEE--AEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI

Query:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD
        LK   +   V D++   CSFW Q H++P+ +    + + +G   G VEEI         G  LR R  L V +PLRRG  +   +  +   S  YE+LPD
Subjt:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD

Query:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG
        FCYVCGCL H   EC+  VV    + ++ ++YG
Subjt:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG

OMP03234.1 hypothetical protein COLO4_10561 [Corchorus olitorius]1.4e-4138.2Show/hide
Query:  WRSWKLTEEEAEK--VKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI
        W ++ LT+EE  +  V    VA  L EG  +LC++GK+LS + VN+D  RNV+   W+  G  ++    + L+  QF S+VEK RV   GPW F+++L++
Subjt:  WRSWKLTEEEAEK--VKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI

Query:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD
        LK+  +  SV +++   C+FW+Q+H++P+ + T  + K +G   G V EI         G  LR+R CL V++PLRRG  +   +  +   S  YE+LPD
Subjt:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD

Query:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG
        FCYVCGCL H+  EC+  V+      +V ++YG
Subjt:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]4.0e-5243.04Show/hide
Query:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK
        W  +K T +E E V       +L   + +LCVV K+ +SKR++ +A R+VM++ WR H  TR E    N++ + F S  EK RV+SSGPW F++SL++L 
Subjt:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK

Query:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC
           + +  LD+ F  C+FW+QIHN+P    +  MA  LG K+G VEEI G     W GP +R+RV + V +PLRRG ++++ D ++ WC + YE+LPDFC
Subjt:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC

Query:  YVCGCLGHSRRECDVVGDGTRAQVGEQYGD
        Y CG +GHS REC+           EQYGD
Subjt:  YVCGCLGHSRRECDVVGDGTRAQVGEQYGD

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]3.2e-4942.45Show/hide
Query:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK
        W ++ L +EE + +   +   +L   + +LC VGK+  SKR+ ++AF +VM+  W+ H  TRIE A  N++ + F +  EK+RV S GPW FD+SL+IL 
Subjt:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK

Query:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC
           + +  LD++   C+FWVQIH +     T+ MAK LG ++G VEE+ G    +W  P L +RV + V +PLRRG +++  D ++ WC + YE+LPDFC
Subjt:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC

Query:  YVCGCLGHSRRE
        Y CGC+GHS RE
Subjt:  YVCGCLGHSRRE

XP_024033132.1 uncharacterized protein LOC112095437 [Citrus clementina]4.3e-3836.97Show/hide
Query:  LTEEEAEK-VKPGDVASVLPEGSREL--CVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDV
        L  EEA+K +  G +     +GS+ +  C+VGK+L ++ VN +  +  +  AWRT    ++E+   N+F  +F S+ +K RV + GPW FDR+L++L++ 
Subjt:  LTEEEAEK-VKPGDVASVLPEGSREL--CVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDV

Query:  QSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFCYV
        + + S+    F   SFW++IHNVP+      + + LG ++G VE+IG    GE  G  +R++V + + +PL++   ++ EDD +    V+YE+LPDFC+ 
Subjt:  QSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFCYV

Query:  CGCLGHSRREC
        CGC+GH  REC
Subjt:  CGCLGHSRREC

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase7.9e-3837.77Show/hide
Query:  WRSWKLTEEE--AEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI
        W ++ LTEEE     V P  V   L EG+   C++GK+LS + VN++  RNVM   W+  G  ++    +NLF  QF S +EK RV    PW F+++L++
Subjt:  WRSWKLTEEE--AEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI

Query:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD
        LK   +   V D++   CSFW Q H++P+ +    + + +G   G VEEI         G  LR R  L V +PLRRG  +   +  +   S  YE+LPD
Subjt:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD

Query:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG
        FCYVCGCL H   EC+  VV    + ++ ++YG
Subjt:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG

A0A1R3K847 Uncharacterized protein6.9e-4238.2Show/hide
Query:  WRSWKLTEEEAEK--VKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI
        W ++ LT+EE  +  V    VA  L EG  +LC++GK+LS + VN+D  RNV+   W+  G  ++    + L+  QF S+VEK RV   GPW F+++L++
Subjt:  WRSWKLTEEEAEK--VKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVI

Query:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD
        LK+  +  SV +++   C+FW+Q+H++P+ + T  + K +G   G V EI         G  LR+R CL V++PLRRG  +   +  +   S  YE+LPD
Subjt:  LKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPD

Query:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG
        FCYVCGCL H+  EC+  V+      +V ++YG
Subjt:  FCYVCGCLGHSRRECD--VVGDGTRAQVGEQYG

A0A1S8AC25 CCHC-type domain-containing protein (Fragment)1.5e-3637.04Show/hide
Query:  RWRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVIL
        R R+ +L++EE  +V   +   +  E     C+VGKVL ++ V+++  +  M+  WRT    +IE   +N+F  +F S+V+K  +M  GPW FDR+L+ L
Subjt:  RWRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVIL

Query:  KDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRR--GFQMQDEDDREFWCSVLYEQLP
         +   +  +   +F   SFWVQIH+VP+   ++ MA  LG  IG VEE+     GE  G  LRLR+ + + +PL++    + ++ED  +    V+YE+LP
Subjt:  KDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRR--GFQMQDEDDREFWCSVLYEQLP

Query:  DFCYVCGCLGHSRREC
        DFC+ CG +GH  REC
Subjt:  DFCYVCGCLGHSRREC

A0A6J1D765 uncharacterized protein LOC1110179021.9e-5243.04Show/hide
Query:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK
        W  +K T +E E V       +L   + +LCVV K+ +SKR++ +A R+VM++ WR H  TR E    N++ + F S  EK RV+SSGPW F++SL++L 
Subjt:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK

Query:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC
           + +  LD+ F  C+FW+QIHN+P    +  MA  LG K+G VEEI G     W GP +R+RV + V +PLRRG ++++ D ++ WC + YE+LPDFC
Subjt:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC

Query:  YVCGCLGHSRRECDVVGDGTRAQVGEQYGD
        Y CG +GHS REC+           EQYGD
Subjt:  YVCGCLGHSRRECDVVGDGTRAQVGEQYGD

A0A6J1DVS4 uncharacterized protein LOC1110235551.5e-4942.45Show/hide
Query:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK
        W ++ L +EE + +   +   +L   + +LC VGK+  SKR+ ++AF +VM+  W+ H  TRIE A  N++ + F +  EK+RV S GPW FD+SL+IL 
Subjt:  WRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARDNLFAVQFWSKVEKVRVMSSGPWAFDRSLVILK

Query:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC
           + +  LD++   C+FWVQIH +     T+ MAK LG ++G VEE+ G    +W  P L +RV + V +PLRRG +++  D ++ WC + YE+LPDFC
Subjt:  DVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQMQDEDDREFWCSVLYEQLPDFC

Query:  YVCGCLGHSRRE
        Y CGC+GHS RE
Subjt:  YVCGCLGHSRRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding5.0e-0825.69Show/hide
Query:  FWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLR
        F S+     ++  GPW+F+  + +++    + S  D EF+   FW+QI  +P+R+ T  +   +G ++G+  E   T  G     L              
Subjt:  FWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLR

Query:  RGFQMQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECDVVGD
          FQ              YE+L +FC  CG L H   EC   G+
Subjt:  RGFQMQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECDVVGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTACTGAAGGTGTTGGTGAGGAAGGCAAGGTTTTGCCGGCGGTGTTGTGGAGTGGTGAAGATGGTCGAGTAAGGGGTTGCAGTGTGTCGGTGAGTGGTGGTTTCAC
GAGCTTTGGTGGACGATGGAGGTCATGGAAGTTGACGGAGGAGGAGGCGGAGAAGGTGAAGCCGGGGGATGTGGCGTCAGTCTTACCTGAGGGATCGAGGGAGCTTTGTG
TGGTGGGGAAGGTGCTCTCGTCAAAGCGTGTGAATATGGATGCTTTCCGAAATGTGATGAGAGCAGCGTGGAGAACACACGGGGTGACTCGGATTGAAGCGGCGAGGGAT
AATTTGTTTGCGGTCCAGTTTTGGTCTAAAGTGGAGAAGGTTAGAGTTATGTCGTCAGGGCCGTGGGCTTTTGATAGATCCCTTGTGATACTAAAGGATGTGCAGTCGGT
TTCGTCAGTTTTAGATGTGGAGTTTAGGGAGTGTTCCTTCTGGGTCCAGATTCATAATGTCCCCATGCGATGGCAGACGAGGGGAATGGCAAAGCACTTGGGAGGGAAGA
TTGGGGTAGTTGAAGAAATAGGTGGGACGCAAGGGGGCGAGTGGACAGGACCATTGCTGAGGCTGAGAGTGTGTCTACGGGTAGATCGACCCCTTCGAAGAGGTTTTCAG
ATGCAGGATGAGGATGATAGGGAGTTCTGGTGCTCAGTGCTGTATGAACAGCTACCAGATTTTTGTTATGTGTGTGGTTGCCTGGGGCACTCGAGGAGGGAGTGCGATGT
AGTGGGTGATGGTACGAGGGCGCAAGTGGGTGAGCAGTATGGTGATTGTGAAGGGATAATAGCCCTTGCGCAGCGGAAAAACGTACAGAACCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTACTGAAGGTGTTGGTGAGGAAGGCAAGGTTTTGCCGGCGGTGTTGTGGAGTGGTGAAGATGGTCGAGTAAGGGGTTGCAGTGTGTCGGTGAGTGGTGGTTTCAC
GAGCTTTGGTGGACGATGGAGGTCATGGAAGTTGACGGAGGAGGAGGCGGAGAAGGTGAAGCCGGGGGATGTGGCGTCAGTCTTACCTGAGGGATCGAGGGAGCTTTGTG
TGGTGGGGAAGGTGCTCTCGTCAAAGCGTGTGAATATGGATGCTTTCCGAAATGTGATGAGAGCAGCGTGGAGAACACACGGGGTGACTCGGATTGAAGCGGCGAGGGAT
AATTTGTTTGCGGTCCAGTTTTGGTCTAAAGTGGAGAAGGTTAGAGTTATGTCGTCAGGGCCGTGGGCTTTTGATAGATCCCTTGTGATACTAAAGGATGTGCAGTCGGT
TTCGTCAGTTTTAGATGTGGAGTTTAGGGAGTGTTCCTTCTGGGTCCAGATTCATAATGTCCCCATGCGATGGCAGACGAGGGGAATGGCAAAGCACTTGGGAGGGAAGA
TTGGGGTAGTTGAAGAAATAGGTGGGACGCAAGGGGGCGAGTGGACAGGACCATTGCTGAGGCTGAGAGTGTGTCTACGGGTAGATCGACCCCTTCGAAGAGGTTTTCAG
ATGCAGGATGAGGATGATAGGGAGTTCTGGTGCTCAGTGCTGTATGAACAGCTACCAGATTTTTGTTATGTGTGTGGTTGCCTGGGGCACTCGAGGAGGGAGTGCGATGT
AGTGGGTGATGGTACGAGGGCGCAAGTGGGTGAGCAGTATGGTGATTGTGAAGGGATAATAGCCCTTGCGCAGCGGAAAAACGTACAGAACCTTTAA
Protein sequenceShow/hide protein sequence
MSTEGVGEEGKVLPAVLWSGEDGRVRGCSVSVSGGFTSFGGRWRSWKLTEEEAEKVKPGDVASVLPEGSRELCVVGKVLSSKRVNMDAFRNVMRAAWRTHGVTRIEAARD
NLFAVQFWSKVEKVRVMSSGPWAFDRSLVILKDVQSVSSVLDVEFRECSFWVQIHNVPMRWQTRGMAKHLGGKIGVVEEIGGTQGGEWTGPLLRLRVCLRVDRPLRRGFQ
MQDEDDREFWCSVLYEQLPDFCYVCGCLGHSRRECDVVGDGTRAQVGEQYGDCEGIIALAQRKNVQNL