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Lag0018790 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018790
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:34374161..34374613
RNA-Seq ExpressionLag0018790
SyntenyLag0018790
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021639401.1 uncharacterized protein LOC110634637 [Hevea brasiliensis]6.6e-0626.47Show/hide
Query:  LNLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSL---DGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRN-MIRLEPN
        +NL  +G++ + IC  C   +ET SH   +C  ++ +W  F P L   D +  F  D W S      + Q L+D++L   VII+W IW  RN  +  + +
Subjt:  LNLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSL---DGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRN-MIRLEPN

Query:  KFKATLDQSSNQIDRHIQEFKGKAQNYQAISKATRI
        +  A +     +    +Q F    ++ +   + T++
Subjt:  KFKATLDQSSNQIDRHIQEFKGKAQNYQAISKATRI

XP_021757463.1 uncharacterized protein LOC110722503 [Chenopodium quinoa]1.1e-0534.78Show/hide
Query:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALW----FHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRN
        NLQ++GI  +P C FC +++ETS H F +C  T  LW      F PS+    PF  ++W  +DT   +  +   + L   V   W +W  RN
Subjt:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALW----FHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRN

XP_021855862.1 uncharacterized protein LOC110795183 [Spinacia oleracea]3.9e-0633.33Show/hide
Query:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFH-----FIPSLDGSPPFCRDNWISLDTW--GWM--CQNLKDED--LEKAVIILWNIWTLRNM
        +LQ +G+  +P C+FC +  ET  H FW+C +    W       F+PS  G          SL+ W  G+M  C + +     L+K + +LW++W LRN 
Subjt:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFH-----FIPSLDGSPPFCRDNWISLDTW--GWM--CQNLKDED--LEKAVIILWNIWTLRNM

Query:  IR
        IR
Subjt:  IR

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]9.2e-0829.93Show/hide
Query:  RKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNKFKATLDQSSN---QIDRHIQ
        RKK+ET+ H  WECKV K +W +  P         R NW + + W W+     +E+  +++II   IW +RN      + FK    ++ +    IDR+I 
Subjt:  RKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNKFKATLDQSSN---QIDRHIQ

Query:  EFKGKAQNYQAISK---ATRIENHRSQSHWILPAQNS
           G+  N +  SK     R     +++ W  P  NS
Subjt:  EFKGKAQNYQAISK---ATRIENHRSQSHWILPAQNS

XP_023903785.1 uncharacterized protein LOC112015598 [Quercus suber]6.6e-0628.77Show/hide
Query:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLD---TWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNKF
        NL ++ I ++PIC  C++  E++ H  W C+    +W       D     CR N   +D      W+  N    DLE      W IWT RN++RL     
Subjt:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLD---TWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNKF

Query:  KATLDQSSNQIDRHIQEFKGKAQNYQAISKATRIENHRSQSHWILP
        KA++  SS+QI    +E+  +           R++ + SQ+ W  P
Subjt:  KATLDQSSNQIDRHIQEFKGKAQNYQAISKATRIENHRSQSHWILP

TrEMBL top hitse value%identityAlignment
A0A2N9HRC9 Uncharacterized protein1.2e-0530.21Show/hide
Query:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNK
        NL ++ I  NP C  C +++E+++H  W+C +    W   +P      P   D++       W+ QN   E++E   I LW IWT RN    E ++
Subjt:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNK

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.5e-0829.93Show/hide
Query:  RKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNKFKATLDQSSN---QIDRHIQ
        RKK+ET+ H  WECKV K +W +  P         R NW + + W W+     +E+  +++II   IW +RN      + FK    ++ +    IDR+I 
Subjt:  RKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNKFKATLDQSSN---QIDRHIQ

Query:  EFKGKAQNYQAISK---ATRIENHRSQSHWILPAQNS
           G+  N +  SK     R     +++ W  P  NS
Subjt:  EFKGKAQNYQAISK---ATRIENHRSQSHWILPAQNS

A0A6J1DX30 uncharacterized protein LOC1110248749.3e-0627.33Show/hide
Query:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMI----RLEPNK
        NL  +GI   P C  C  ++E+  H F+ CK  + +W    P L  +     DN   L+ W  + + L+ +DL  A I  W IW  RN +    ++ P +
Subjt:  NLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMI----RLEPNK

Query:  FKATLDQSSNQIDRHIQEFKGKAQNYQAISKATRIENHRSQSHWILPAQN
        FK   +  +  +D H Q    +  NY   +++    NHR    +  P+ +
Subjt:  FKATLDQSSNQIDRHIQEFKGKAQNYQAISKATRIENHRSQSHWILPAQN

A0A803NH51 Uncharacterized protein1.2e-0530.2Show/hide
Query:  SNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDED-----------LEKAVIILWNIWTLRNMIRLEPNKF
        S+P C FC    E S H  WEC VT+A+WF       GS    R N I +  W    +  K +D           LE A II+  +W LRN + +  N  
Subjt:  SNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDED-----------LEKAVIILWNIWTLRNMIRLEPNKF

Query:  KATLDQSSNQIDRHIQEFKGKAQNYQAISKATRIENHRSQSHWILPAQN
           L+   + I+R + E  GK               H  Q+ W+ P  N
Subjt:  KATLDQSSNQIDRHIQEFKGKAQNYQAISKATRIENHRSQSHWILPAQN

A0A803Q9W0 Uncharacterized protein4.2e-0631.58Show/hide
Query:  LNLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFI--PSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRL
        +NL+ +G+D NP+C +C +++ET  H  W C   K +W +F   P++  S     D  I +       Q +  +D    +I+ W IW  RN  RL
Subjt:  LNLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFI--PSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCTTAATCTTCAAAAGAAAGGCATCGACTCTAATCCTATTTGTGCGTTTTGTAGGAAAAAGAAGGAGACGTCCAGCCACCCATTCTGGGAATGCAAAGTA
ACTAAAGCTCTATGGTTCCATTTCATTCCTTCCTTAGACGGCTCCCCCCCTTTTTGCAGGGATAATTGGATTAGCCTCGATACTTGGGGGTGGATGTGCCAAAAC
CTAAAGGATGAAGATCTAGAGAAGGCGGTCATCATTTTGTGGAACATCTGGACTCTAAGGAACATGATCAGACTTGAACCCAACAAATTTAAAGCTACCTTGGAT
CAATCAAGCAACCAAATTGACAGACACATTCAAGAATTTAAAGGAAAAGCTCAAAATTACCAAGCGATCTCCAAAGCCACGAGAATTGAGAACCACCGGAGTCAA
TCTCACTGGATCCTTCCGGCCCAAAACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCTTAATCTTCAAAAGAAAGGCATCGACTCTAATCCTATTTGTGCGTTTTGTAGGAAAAAGAAGGAGACGTCCAGCCACCCATTCTGGGAATGCAAAGTA
ACTAAAGCTCTATGGTTCCATTTCATTCCTTCCTTAGACGGCTCCCCCCCTTTTTGCAGGGATAATTGGATTAGCCTCGATACTTGGGGGTGGATGTGCCAAAAC
CTAAAGGATGAAGATCTAGAGAAGGCGGTCATCATTTTGTGGAACATCTGGACTCTAAGGAACATGATCAGACTTGAACCCAACAAATTTAAAGCTACCTTGGAT
CAATCAAGCAACCAAATTGACAGACACATTCAAGAATTTAAAGGAAAAGCTCAAAATTACCAAGCGATCTCCAAAGCCACGAGAATTGAGAACCACCGGAGTCAA
TCTCACTGGATCCTTCCGGCCCAAAACAGTTGA
Protein sequenceShow/hide protein sequence
MPLNLQKKGIDSNPICAFCRKKKETSSHPFWECKVTKALWFHFIPSLDGSPPFCRDNWISLDTWGWMCQNLKDEDLEKAVIILWNIWTLRNMIRLEPNKFKATLD
QSSNQIDRHIQEFKGKAQNYQAISKATRIENHRSQSHWILPAQNS