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Lag0018817 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018817
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRING-type domain-containing protein
Genome locationchr5:34931652..34932059
RNA-Seq ExpressionLag0018817
SyntenyLag0018817
Gene Ontology termsGO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577374.1 RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]3.6e-4364.34Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTT--------VDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAI
        M IIVIFG FL +LV ++FF LCLYIC QCYN GF E D     +G +TTT        VD  E+NR  +IAMEKLTKPS +YDYE+++EA S LS+CAI
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTT--------VDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAI

Query:  CLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        CLEEF     CRVFP CKHMFHTHCI+ WLGINQTCP+CRTQL
Subjt:  CLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

KAG6600728.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]8.8e-4266.9Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSVDYDYEEND--EAPSELSEC
        MPIIV+FGF LTVLV  SFF LC+YIC QC+ QGF  A +T R NG G  T       TV+ EELN QT   MEKLT P VDY  +END   A SEL+EC
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSVDYDYEEND--EAPSELSEC

Query:  AICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        AICLE FG R SCRVFP CKHMFHTHCII WLGIN TCPICRT L
Subjt:  AICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

KAG7031368.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-4266.9Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSVDYDYEEND--EAPSELSEC
        MPIIV+FGF LTVLV  SFF LC+YIC QC+ QGF  A +T R NG G  T       TV+ EELN QT   MEKLT P VDY  +END   A SEL+EC
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSVDYDYEEND--EAPSELSEC

Query:  AICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        AICLE FG R SCRVFP CKHMFHTHCII WLGIN TCPICRT L
Subjt:  AICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]4.8e-3261.42Show/hide
Query:  ICLQ-------CYN-QGFTEADRTGRANGG---TTTTV------DLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPY
        ICL+       C N  GF+E+++ G  N     TTTTV      D EE NRQ ++AMEKLTKPS  Y+ EENDE+PS LSEC ICLE+ GER SCRVFP 
Subjt:  ICLQ-------CYN-QGFTEADRTGRANGG---TTTTV------DLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPY

Query:  CKHMFHTHCIISWLGINQTCPICRTQL
        CKH+FHTHCII+WL INQTCPICRT+L
Subjt:  CKHMFHTHCIISWLGINQTCPICRTQL

XP_023545744.1 RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]5.5e-2865.18Show/hide
Query:  GFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSVDYDYEEND--EAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLG
        GF  A +T R NG G  T       TV+ EELN Q   AMEKLT P VDY  +END   A SEL+ECAICLE FG R SCRVFP CKHMFHTHCII WLG
Subjt:  GFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSVDYDYEEND--EAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLG

Query:  INQTCPICRTQL
        IN TCPICRT L
Subjt:  INQTCPICRTQL

TrEMBL top hitse value%identityAlignment
A0A0A0L7Y8 RING-type domain-containing protein4.3e-2676Show/hide
Query:  ELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPI
        E NRQ ++AMEKLTKPS  Y+ EENDE+PS LSEC ICLE+ GER SCRVFP CKH+FHTHCII+WL INQTCPI
Subjt:  ELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPI

A0A2C9W6C2 RING-type domain-containing protein1.6e-1245.57Show/hide
Query:  LNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        +N+  RI +     PS+ Y   EN+   S+  +C ICLE++ E   CR+FP CKH+FH++CI  WLG N TCPICR  +
Subjt:  LNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

A0A2N9H006 RING-type domain-containing protein1.2e-1247.5Show/hide
Query:  DLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICR
        D+EE   + R+   +L  P ++Y   +N +A S L +CAICLE+F +  SCRVF  CKH+FH  C+  WL  N TCPICR
Subjt:  DLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICR

A0A7J7D251 RING-H2 finger protein ATL56-like3.9e-1133.58Show/hide
Query:  IIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEAD---RTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGE
        ++++ G  L VL+ +   G       + + +GF EA      G   G + +  DLE+L                 YDY  ND A S   +CA+CL+ F +
Subjt:  IIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEAD---RTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGE

Query:  RASCRVFPYCKHMFHTHCIISWLGINQTCPICRT
           CR+ P C+H FH+HCI +WL     CPICRT
Subjt:  RASCRVFPYCKHMFHTHCIISWLGINQTCPICRT

A0A7N2M906 RING-type domain-containing protein2.3e-1136.28Show/hide
Query:  GLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIIS
        GL +Y   +C +Q F+ ++ + +A              +Q + A+++L+ P   Y  ++ + A S    C ICLEEF     C+ FP+CKH+FH+HCI  
Subjt:  GLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIIS

Query:  WLGINQTCPICRT
        WL    TCPICRT
Subjt:  WLGINQTCPICRT

SwissProt top hitse value%identityAlignment
Q7X843 RING-H2 finger protein ATL487.0e-1051.06Show/hide
Query:  ECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        +CA+CL EF +    R+ P C H FH HCI +WL  N TCP+CR  L
Subjt:  ECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

Q8LF65 RING-H2 finger protein ATL174.1e-1051.06Show/hide
Query:  ECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        EC++CL EF +  S RV P CKH FH HCI  W   + +CP+CR+Q+
Subjt:  ECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

Q8LGA5 E3 ubiquitin-protein ligase ATL311.0e-0832.59Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGER
        M ++V+    +  L F+ FF + +  C    +   T A   G A    T       L+ +T   +E  T P+  Y   +  +      ECAICL EF + 
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGER

Query:  ASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
         + R+ P C H+FH HCI +WL  + TCP+CRT L
Subjt:  ASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

Q9C919 Putative RING-H2 finger protein ATL191.1e-1046.67Show/hide
Query:  DYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        ++EE++E   E  ECAICL  +     CRVFP C+H++H  CI +WL  + TCP CR  L
Subjt:  DYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

Q9LUL6 Putative RING-H2 finger protein ATL616.0e-0929.41Show/hide
Query:  IIVIFGFFLTVLVFISFFGLCLYI---CLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGE
        I ++F FF        FFG+   +    ++CYN    + D     +G  + T+       + R+ ++     S+    + N +    + EC +CL E  +
Subjt:  IIVIFGFFLTVLVFISFFGLCLYI---CLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGE

Query:  RASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
            RV P C H FH  CI SWL  N TCPICR ++
Subjt:  RASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

Arabidopsis top hitse value%identityAlignment
AT1G53010.1 RING/U-box superfamily protein7.7e-1246.67Show/hide
Query:  DYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        ++EE++E   E  ECAICL  +     CRVFP C+H++H  CI +WL  + TCP CR  L
Subjt:  DYEENDEAPSELSECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

AT3G05200.1 RING/U-box superfamily protein7.2e-1030.37Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGER
        M +IV+    +  L F+ FF +    C    + G + A       GG  +   +    R   +++ + T P+  Y   +  +      ECAICL EF + 
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGER

Query:  ASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
         + R+ P C H+FH HCI +WL  + TCP+CR  L
Subjt:  ASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

AT3G14320.1 Zinc finger, C3HC4 type (RING finger) family protein4.2e-1029.41Show/hide
Query:  IIVIFGFFLTVLVFISFFGLCLYI---CLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGE
        I ++F FF        FFG+   +    ++CYN    + D     +G  + T+       + R+ ++     S+    + N +    + EC +CL E  +
Subjt:  IIVIFGFFLTVLVFISFFGLCLYI---CLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGE

Query:  RASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
            RV P C H FH  CI SWL  N TCPICR ++
Subjt:  RASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein5.0e-1151.06Show/hide
Query:  ECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
        +CA+CL EF +    R+ P C H FH HCI +WL  N TCP+CR  L
Subjt:  ECAICLEEFGERASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL

AT5G27420.1 carbon/nitrogen insensitive 17.2e-1032.59Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGER
        M ++V+    +  L F+ FF + +  C    +   T A   G A    T       L+ +T   +E  T P+  Y   +  +      ECAICL EF + 
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGER

Query:  ASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL
         + R+ P C H+FH HCI +WL  + TCP+CRT L
Subjt:  ASCRVFPYCKHMFHTHCIISWLGINQTCPICRTQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATAATCGTCATCTTTGGCTTCTTCTTGACAGTTTTGGTATTCATCTCCTTCTTCGGCTTGTGCCTCTACATTTGTCTCCAATGCTACAACCAGGGGTTCACGGA
GGCCGATCGAACCGGCCGTGCAAATGGAGGAACGACAACGACGGTGGACCTTGAGGAACTGAATCGACAAACTCGAATAGCGATGGAGAAGTTGACGAAGCCATCGGTAG
ATTATGACTACGAGGAGAACGATGAAGCTCCATCGGAGTTGAGCGAATGTGCGATATGTTTGGAGGAGTTTGGGGAAAGGGCATCATGTCGAGTCTTCCCCTATTGCAAG
CATATGTTTCATACGCATTGCATAATCAGCTGGTTAGGGATTAATCAAACTTGTCCCATATGTCGGACTCAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCATAATCGTCATCTTTGGCTTCTTCTTGACAGTTTTGGTATTCATCTCCTTCTTCGGCTTGTGCCTCTACATTTGTCTCCAATGCTACAACCAGGGGTTCACGGA
GGCCGATCGAACCGGCCGTGCAAATGGAGGAACGACAACGACGGTGGACCTTGAGGAACTGAATCGACAAACTCGAATAGCGATGGAGAAGTTGACGAAGCCATCGGTAG
ATTATGACTACGAGGAGAACGATGAAGCTCCATCGGAGTTGAGCGAATGTGCGATATGTTTGGAGGAGTTTGGGGAAAGGGCATCATGTCGAGTCTTCCCCTATTGCAAG
CATATGTTTCATACGCATTGCATAATCAGCTGGTTAGGGATTAATCAAACTTGTCCCATATGTCGGACTCAATTGTAG
Protein sequenceShow/hide protein sequence
MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNQGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSVDYDYEENDEAPSELSECAICLEEFGERASCRVFPYCK
HMFHTHCIISWLGINQTCPICRTQL