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Lag0018824 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018824
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr5:35026042..35032253
RNA-Seq ExpressionLag0018824
SyntenyLag0018824
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.4e-0673.68Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN  RWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFR
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-0468.97Show/hide
Query:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
        + L  WGQD++GSWEHN +RWNSL+PDFR
Subjt:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.4e-0868.18Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFREADECSL
        ESGQ ADS+ L FWGQDR+ SWEHN  RWNSLLP FRE  + S+
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFREADECSL
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-0871.79Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN  RWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFRE
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]2.2e-0468.97Show/hide
Query:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
        + L  WGQD++GSWEHN +RWNSL+PDFR
Subjt:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein1.0e-0468.97Show/hide
Query:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
        + L  WGQD++GSWEHN +RWNSL+PDFR
Subjt:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
A0A5A7SPG1 Pol protein6.6e-0773.68Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN  RWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein7.0e-0968.18Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFREADECSL
        ESGQ ADS+ L FWGQDR+ SWEHN  RWNSLLP FRE  + S+
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFREADECSL
A0A5D3C3J6 Gag/pol protein1.6e-0871.79Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN  RWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFRE
A0A5D3E3M6 Uncharacterized protein1.0e-0468.97Show/hide
Query:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
        + L  WGQD++GSWEHN +RWNSL+PDFR
Subjt:  ISLPFWGQDRMGSWEHNRVRWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATATGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGTAAGATGGAATTCACTCCTTCCTGA
CTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGTCCTACCCTCTCAATGGCACGAGAAGTGTAACCTCTGTGGTTATTGTGTCAT
TCAAGAAGAATTTTCCAGCGAAGGAACTCAAAGAAGGCTACTGCGTTTTGTTCGTTGGTGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGGAGCTTCACCTGCCAGC
TCCTCCATTGCTAGCGGCCGTGAGAGCAAGGCATTTGGATGTCCAGTTTTCGACAAGACAGACCAAAAGGGACAATATAAAGGATGGATAGAAGAAGTTGTGATACTAAA
TCACCAAGAGTACTGTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATATGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTGTAAGATGGAATTCACTCCTTCCTGA
CTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGTCCTACCCTCTCAATGGCACGAGAAGTGTAACCTCTGTGGTTATTGTGTCAT
TCAAGAAGAATTTTCCAGCGAAGGAACTCAAAGAAGGCTACTGCGTTTTGTTCGTTGGTGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGGAGCTTCACCTGCCAGC
TCCTCCATTGCTAGCGGCCGTGAGAGCAAGGCATTTGGATGTCCAGTTTTCGACAAGACAGACCAAAAGGGACAATATAAAGGATGGATAGAAGAAGTTGTGATACTAAA
TCACCAAGAGTACTGTAACTAG
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPFWGQDRMGSWEHNRVRWNSLLPDFREADECSLKWLLRVLNKGSYPLNGTRSVTSVVIVSFKKNFPAKELKEGYCVLFVGASLAKNGQVYNGASPAS
SSIASGRESKAFGCPVFDKTDQKGQYKGWIEEVVILNHQEYCN