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Lag0018827 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018827
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:35076618..35076944
RNA-Seq ExpressionLag0018827
SyntenyLag0018827
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-1756.07Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST  R S F+RLS+STSKK R   S FD LK+T+DQ QR+M  L+ K F E +   K+ S V SRMKRKFSV INT+DSL VKP  II TN  +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKSF
         D++KSF
Subjt:  HDQDKSF

KAA0059024.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-1757.28Show/hide
Query:  TRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPDHDQ
        TR STF+RLS+STSKK R S S FD LK+T+DQ QR+M +L+ K F E +   K+ S V SRMKRK SV INT+ SL VKP  II TNPT+EG +    +
Subjt:  TRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPDHDQ

Query:  DKS
        +KS
Subjt:  DKS

KAA0060302.1 gag protease polyprotein [Cucumis melo var. makuwa]2.1e-1755.66Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST  R S F+RL++STSKK R S S FDCLK+T+DQ QR+M  L+ K F E +   K+ S V SRMKRK SV INT+ SL VKP  II TNP +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKS
         D++KS
Subjt:  HDQDKS

KAA0065608.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.0e-1755.66Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST TR STF+RLS+STSKK R S S FD LK+T+DQ Q++M +L+ K F E +   K+ S V SR KRK SV INT+ SL VKP  II TNP +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKS
         D++KS
Subjt:  HDQDKS

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]2.7e-1756.6Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST  R S F+RLS+STSKK R S S FD LK+T+DQ QR+M +L+ K F E +   K+ S V SRMKRK S+ INTK SL VKP LII TNP +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKS
         D++KS
Subjt:  HDQDKS

TrEMBL top hitse value%identityAlignment
A0A5A7TJH2 Retrotransposon gag protein1.7e-1756.07Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST  R S F+RLS+STSKK R   S FD LK+T+DQ QR+M  L+ K F E +   K+ S V SRMKRKFSV INT+DSL VKP  II TN  +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKSF
         D++KSF
Subjt:  HDQDKSF

A0A5A7UV73 Retrotransposon gag protein2.2e-1757.28Show/hide
Query:  TRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPDHDQ
        TR STF+RLS+STSKK R S S FD LK+T+DQ QR+M +L+ K F E +   K+ S V SRMKRK SV INT+ SL VKP  II TNPT+EG +    +
Subjt:  TRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPDHDQ

Query:  DKS
        +KS
Subjt:  DKS

A0A5A7UWS9 Gag protease polyprotein9.9e-1855.66Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST  R S F+RL++STSKK R S S FDCLK+T+DQ QR+M  L+ K F E +   K+ S V SRMKRK SV INT+ SL VKP  II TNP +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKS
         D++KS
Subjt:  HDQDKS

A0A5D3CA53 Retrotransposon gag protein2.9e-1755.66Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST TR STF+RLS+STSKK R S S FD LK+T+DQ Q++M +L+ K F E +   K+ S V SR KRK SV INT+ SL VKP  II TNP +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKS
         D++KS
Subjt:  HDQDKS

A0A5D3D5Q0 Gag protease polyprotein1.3e-1756.6Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD
        ST  R S F+RLS+STSKK R S S FD LK+T+DQ QR+M +L+ K F E +   K+ S V SRMKRK S+ INTK SL VKP LII TNP +EG +  
Subjt:  STSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPD

Query:  HDQDKS
         D++KS
Subjt:  HDQDKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTCCACTCGACCTTCAACTTTTCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATTGCCTCAAAGTAACAGACGATCA
ACCTCAAAGAAAGATGGATAATTTAGAGGTGAAACTGTTCGATGAAGCAAGCAGTCAAAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTTTCTGTTC
TCATAAATACAAAAGATTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACTAATCCTACAAGCGAAGGATCTGATCCAGACCACGATCAAGATAAGAGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTCCACTCGACCTTCAACTTTTCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATTGCCTCAAAGTAACAGACGATCA
ACCTCAAAGAAAGATGGATAATTTAGAGGTGAAACTGTTCGATGAAGCAAGCAGTCAAAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTTTCTGTTC
TCATAAATACAAAAGATTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACTAATCCTACAAGCGAAGGATCTGATCCAGACCACGATCAAGATAAGAGCTTTTAA
Protein sequenceShow/hide protein sequence
MSTSTRPSTFQRLSVSTSKKSRSSISVFDCLKVTDDQPQRKMDNLEVKLFDEASSQKKLQSIVLSRMKRKFSVLINTKDSLKVKPNLIILTNPTSEGSDPDHDQDKSF