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Lag0018833 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018833
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:35165165..35165713
RNA-Seq ExpressionLag0018833
SyntenyLag0018833
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5447347.1 hypothetical protein F2P56_032905 [Juglans regia]7.7e-0930.95Show/hide
Query:  DAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGSFAK
        DAA  K     G+G+++R+ TG +VA  +   PL   P  AEAI  LE  ++   L ++ + +  D+L +I  +  +    +    ++ D++G + +F  
Subjt:  DAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGSFAK

Query:  ISFCHIKMEYNLMSHELARLGMVSST
         S  HI+ E N  +HELA+  +V+ST
Subjt:  ISFCHIKMEYNLMSHELARLGMVSST

RYR10083.1 hypothetical protein Ahy_B05g078550 [Arachis hypogaea]4.5e-0934.04Show/hide
Query:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCF-PVVADIQGLIG
        ++VDAA   H +  GVGVV+R++ G ++A   + IP       AEA A   GL        SKV + SD++ ++  L+ + RC   CF   + D   LI 
Subjt:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCF-PVVADIQGLIG

Query:  SFAKISFCHIKMEYNLMSHELARLGMVSSTQYWSRNFPQWV
        +F  + F H+K E N ++HELA L + +    W  + P  V
Subjt:  SFAKISFCHIKMEYNLMSHELARLGMVSSTQYWSRNFPQWV

XP_016199994.1 uncharacterized protein LOC107641002 [Arachis ipaensis]1.0e-0833.57Show/hide
Query:  VDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCF-PVVADIQGLIGSF
        VDAA   H +  GVGVV+R + G ++A+  + IP       AEA A   GL  +     +KV + SD+  ++  L  K RC + CF   + D   LI +F
Subjt:  VDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCF-PVVADIQGLIGSF

Query:  AKISFCHIKMEYNLMSHELARLGMVSSTQYWSRNFPQWVLELA
          + F H+K E N ++HELA L + +    W  +    +  LA
Subjt:  AKISFCHIKMEYNLMSHELARLGMVSSTQYWSRNFPQWVLELA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.3e-1135.57Show/hide
Query:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGS
        L+ DAA      ++  G ++R  +  LVA     +P   SPL AE   ILEGLK   +   + + V SDSL  I ++R++   + D    V +IQ L   
Subjt:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGS

Query:  FAKISFCHIKMEYNLMSHELARLGMV--SSTQYWSRNFPQWVLELASTE
        FA ISF H   + N  +H LA+ G+   S+T  W  NFP W+L+L   +
Subjt:  FAKISFCHIKMEYNLMSHELARLGMV--SSTQYWSRNFPQWVLELASTE

XP_035541483.1 uncharacterized protein LOC118344571 [Juglans regia]7.7e-0930.95Show/hide
Query:  DAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGSFAK
        DAA  K     G+G+++R+ TG +VA  +   PL   P  AEAI  LE  ++   L ++ + +  D+L +I  +  +    +    ++ D++G + +F  
Subjt:  DAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGSFAK

Query:  ISFCHIKMEYNLMSHELARLGMVSST
         S  HI+ E N  +HELA+  +V+ST
Subjt:  ISFCHIKMEYNLMSHELARLGMVSST

TrEMBL top hitse value%identityAlignment
A0A2N9GN35 Uncharacterized protein9.8e-1030.92Show/hide
Query:  DFILHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGL
        +F ++ DAA +    T+GVGVV+R+  G  +A+  +  P       AEA+A    +++ + + +  V V  DSL +I  L+D++ C A    ++ DIQ L
Subjt:  DFILHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGL

Query:  IGSFAKISFCHIKMEYNLMSHELAR--LGMVSSTQYWSRNFPQWVLELASTE
          SF ++ +CH++ E N  +H LAR  L + S    W    P ++ ++   E
Subjt:  IGSFAKISFCHIKMEYNLMSHELAR--LGMVSSTQYWSRNFPQWVLELASTE

A0A2N9GXF5 Uncharacterized protein9.8e-1030.92Show/hide
Query:  DFILHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGL
        +F ++ DAA +    T+GVGVV+R+  G  +A+  +  P       AEA+A    +++ + + +  V V  DSL +I  L+D++ C A    ++ DIQ L
Subjt:  DFILHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGL

Query:  IGSFAKISFCHIKMEYNLMSHELAR--LGMVSSTQYWSRNFPQWVLELASTE
          SF ++ +CH++ E N  +H LAR  L + S    W    P ++ ++   E
Subjt:  IGSFAKISFCHIKMEYNLMSHELAR--LGMVSSTQYWSRNFPQWVLELASTE

A0A2N9HLX2 Uncharacterized protein2.6e-1031.17Show/hide
Query:  DFILHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGL
        DF ++ DAA      T+GVGVV+R+  G  +A+  +  P   +   A+A+A    L++ + + +  V V  DS ++I+ L+DK+ C A    ++ DIQ L
Subjt:  DFILHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGL

Query:  IGSFAKISFCHIKMEYNLMSHELAR--LGMVSSTQYWSRNFPQWVLELASTELS
          SF  +S+CH++ E N  +H LAR  + + S    W  + P ++  +  ++ S
Subjt:  IGSFAKISFCHIKMEYNLMSHELAR--LGMVSSTQYWSRNFPQWVLELASTELS

A0A2N9J6Y2 Uncharacterized protein9.8e-1033.12Show/hide
Query:  DFILHVDAA-WTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQG
        DF ++ DAA + KH +T  VGVV+R   G  +A+  +  P   +   AEA+A    L++ + + +  V V  DSL +IT L+D++RC A    ++ DIQ 
Subjt:  DFILHVDAA-WTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQG

Query:  LIGSFAKISFCHIKMEYNLMSHELARLGMVSSTQY--WSRNFPQWVLELASTELSFF
        L  SF  +++ H++ E N  +H LAR  +  S+ +  W  + P ++  +   EL  F
Subjt:  LIGSFAKISFCHIKMEYNLMSHELARLGMVSSTQY--WSRNFPQWVLELASTELSFF

A0A6J1DX30 uncharacterized protein LOC1110248743.1e-1135.57Show/hide
Query:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGS
        L+ DAA      ++  G ++R  +  LVA     +P   SPL AE   ILEGLK   +   + + V SDSL  I ++R++   + D    V +IQ L   
Subjt:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGS

Query:  FAKISFCHIKMEYNLMSHELARLGMV--SSTQYWSRNFPQWVLELASTE
        FA ISF H   + N  +H LA+ G+   S+T  W  NFP W+L+L   +
Subjt:  FAKISFCHIKMEYNLMSHELARLGMV--SSTQYWSRNFPQWVLELASTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.2e-0929.92Show/hide
Query:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGS
        +  DAAW   +   G G V+R+        +Q        PL AEAIA+   L+   S+ I+K+++ SDS  LIT +  +     + + ++ DI  L   
Subjt:  LHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCFPVVADIQGLIGS

Query:  FAKISFCHIKMEYNLMSHELARLGMVS
        FA +SF  +    N ++ ELA+  ++S
Subjt:  FAKISFCHIKMEYNLMSHELARLGMVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGATTAATTCAAACTAGGGATATGGTTTCTCAGATGTTTTCAGGAGGGGAGGACTTTATTTTACATGTTGATGCAGCGTGGACTAAACACTCCATGACCAGTGG
TGTGGGGGTTGTGTTGCGCTCAAAGACGGGCAAATTGGTGGCTATTTTTCAAAGAGGAATCCCTTTAACTTCATCGCCATTATGTGCTGAGGCGATAGCGATTCTTGAAG
GTCTCAAAATGCTTTTCTCCCTAAGGATTAGTAAGGTCACGGTATGTTCGGATTCCCTATCGTTAATTACTATTCTTCGGGATAAAGATCGGTGTCAAGCAGATTGCTTT
CCAGTGGTGGCAGATATTCAAGGTCTGATTGGTTCTTTTGCCAAGATTTCTTTCTGTCATATAAAAATGGAGTATAATTTAATGTCACATGAGCTAGCAAGGTTAGGGAT
GGTGTCTTCTACTCAATATTGGAGTAGGAATTTCCCTCAATGGGTGTTAGAGTTGGCTAGTACAGAATTGTCTTTTTTTGTAACCCCTTGCGGGAGTCTTTGTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGATTAATTCAAACTAGGGATATGGTTTCTCAGATGTTTTCAGGAGGGGAGGACTTTATTTTACATGTTGATGCAGCGTGGACTAAACACTCCATGACCAGTGG
TGTGGGGGTTGTGTTGCGCTCAAAGACGGGCAAATTGGTGGCTATTTTTCAAAGAGGAATCCCTTTAACTTCATCGCCATTATGTGCTGAGGCGATAGCGATTCTTGAAG
GTCTCAAAATGCTTTTCTCCCTAAGGATTAGTAAGGTCACGGTATGTTCGGATTCCCTATCGTTAATTACTATTCTTCGGGATAAAGATCGGTGTCAAGCAGATTGCTTT
CCAGTGGTGGCAGATATTCAAGGTCTGATTGGTTCTTTTGCCAAGATTTCTTTCTGTCATATAAAAATGGAGTATAATTTAATGTCACATGAGCTAGCAAGGTTAGGGAT
GGTGTCTTCTACTCAATATTGGAGTAGGAATTTCCCTCAATGGGTGTTAGAGTTGGCTAGTACAGAATTGTCTTTTTTTGTAACCCCTTGCGGGAGTCTTTGTTCCTGA
Protein sequenceShow/hide protein sequence
MDRLIQTRDMVSQMFSGGEDFILHVDAAWTKHSMTSGVGVVLRSKTGKLVAIFQRGIPLTSSPLCAEAIAILEGLKMLFSLRISKVTVCSDSLSLITILRDKDRCQADCF
PVVADIQGLIGSFAKISFCHIKMEYNLMSHELARLGMVSSTQYWSRNFPQWVLELASTELSFFVTPCGSLCS