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Lag0018888 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018888
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:35990471..35991250
RNA-Seq ExpressionLag0018888
SyntenyLag0018888
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6257659.1 unnamed protein product [Miscanthus lutarioriparius]3.5e-1542.16Show/hide
Query:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW
        MNR  A A+G+ +G F +VD D  D      LRL+V++DI KPL RG++  +G    + W  +TYE  PDFCY CG+IGHV   C  ++   E+  Y   
Subjt:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW

Query:  MR
        +R
Subjt:  MR

KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]9.9e-1841.18Show/hide
Query:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW
        M+R   E +G  IG  ++V+ DED +     LR++VKL+ITKPL RG M+++  +  ++W    YE +P+FCY CG+I HV+ EC  +V  +E+  +G W
Subjt:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW

Query:  MR
        +R
Subjt:  MR

KAE8782072.1 hypothetical protein D1007_44590 [Hordeum vulgare]1.2e-1543.14Show/hide
Query:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW
        M+R   E +G  +G+F DV+  ED      SLR++VKLDITKPL RG +I  G      W    YE + +FCY CGIIGH +  C   +   EE  +G W
Subjt:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW

Query:  MR
        +R
Subjt:  MR

XP_021656458.1 uncharacterized protein LOC110647091 [Hevea brasiliensis]2.1e-1543.52Show/hide
Query:  CMNRKRAEALGNLIGSFEDVDWDEDDRRG-ENSLRLQVKLDITKPLKRGLMIR--VGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHD
        C ++  A+ + N+IG F  + +DEDD  G  N+LR +V + I KPL+RG++++  VGT     W+++ YER+P FC+ CG +GHV+ EC N  + EE   
Subjt:  CMNRKRAEALGNLIGSFEDVDWDEDDRRG-ENSLRLQVKLDITKPLKRGLMIR--VGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHD

Query:  YGEWMRNM
        YGEW+R M
Subjt:  YGEWMRNM

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]2.2e-1740.43Show/hide
Query:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW
        M +   EA+G  IG+F  +D DEDD      LR++V+LDI KPL RG+M+ VG + +  W  V YE +PDFCY CGIIGH    CE +V+  E   + ++
Subjt:  MNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEW

Query:  MRNMTTPTSPHVY-----RTPSYRANYGWNKGRGRGRGMRS
        +R M  P    V      R+   R    W K  G   GM S
Subjt:  MRNMTTPTSPHVY-----RTPSYRANYGWNKGRGRGRGMRS

TrEMBL top hitse value%identityAlignment
A0A803P614 Uncharacterized protein4.5e-1639.37Show/hide
Query:  NRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDEC------ENQVDPEEEH
        +R  AEALGN+IG F +V  D  +      LR++VKL +TKPL RG MI++    +E WV   YER+P+FC++CG +GH  + C       +  + +++ 
Subjt:  NRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDEC------ENQVDPEEEH

Query:  DYGEWMRNMTTPTSPH-VYRTPSYRAN
         YG WM+    PT+ +  YRT   +AN
Subjt:  DYGEWMRNMTTPTSPH-VYRTPSYRAN

A0A803PJK4 Uncharacterized protein5.9e-1642.59Show/hide
Query:  LGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECE---NQVDPEEEHD--YGEWMRN
        +G LIG++ DV  D  +      LR++V++D++KPL RG M+      +E W++  YER+PDFCY+CGIIGHV D+C+    ++D  +E D  YG WM  
Subjt:  LGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECE---NQVDPEEEHD--YGEWMRN

Query:  MTTPTSPH
           P SP+
Subjt:  MTTPTSPH

A0A803Q028 Uncharacterized protein1.3e-1542.34Show/hide
Query:  AEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECE---NQVDPEEEHD--YGEW
        A  LGNLIG+F +V  D  +      LR++V +D++KPL RG M+     A++ W+   YER+PDFCY+CGI+GHV D+C     ++D  +E D  YG W
Subjt:  AEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECE---NQVDPEEEHD--YGEW

Query:  MRNMTTPTSPH
        M     P S +
Subjt:  MRNMTTPTSPH

A0A803Q6Y1 Uncharacterized protein1.3e-1540.16Show/hide
Query:  AEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDEC---ENQVDPEEEHD--YGEW
        AEALGN IG F DV  D  ++     LR+++K+ +TK L RG MIR+ +  +E W+   YER+P+FC++CGI+GH  ++C     ++D   + D  YG W
Subjt:  AEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDEC---ENQVDPEEEHD--YGEW

Query:  MRNMTTPTSPH-VYRTPSYRAN
        ++    PT+ +  YRT   +AN
Subjt:  MRNMTTPTSPH-VYRTPSYRAN

A0A803QHU2 Uncharacterized protein5.9e-1640.48Show/hide
Query:  NRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDEC---ENQVD--PEEEHD
        +R  AEALGN+IG F +V  D  +      LR++VKL +TKPL RG MI++    +E WV   YER+P+FC++CG +GH    C     ++D   +++  
Subjt:  NRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDEC---ENQVD--PEEEHD

Query:  YGEWMRNMTTPTSPH-VYRTPSYRAN
        YG WM+    PT+ +  YRT   +AN
Subjt:  YGEWMRNMTTPTSPH-VYRTPSYRAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGCATGAACAGGAAACGAGCAGAGGCTCTGGGGAATTTGATAGGCAGCTTTGAAGACGTTGACTGGGATGAAGACGACAGAAGGGGAGAAAATTCTCTGAGATT
ACAAGTAAAGTTAGATATCACAAAGCCGCTGAAAAGAGGGTTGATGATCAGAGTGGGTACAAAAGCCGAAGAAGCATGGGTGAAAGTAACGTATGAAAGAATGCCAGATT
TTTGTTATAAATGTGGTATCATCGGACATGTTAAAGACGAATGTGAAAACCAGGTCGACCCAGAGGAAGAACATGATTATGGAGAATGGATGAGAAATATGACGACCCCG
ACAAGCCCGCATGTCTACAGAACTCCATCTTACAGAGCAAATTATGGATGGAACAAAGGAAGAGGCAGGGGTCGAGGAATGAGATCCTACGATTGGCGACAAACTGAACT
GAACAATAGAAATCAGAAAAACGAATATCATGGGTCTACTGCCGGAGAAACTGCCGGAAAACAGGTCGGAGACATCAGGGACGACCGGAGCAAAAGCAGAACAGAAGAGA
CAAGGAAAAAGCTCGAATCCCATAGCAGTACTGTTCCAACGGCTAATAAAGTGTCAGAGGACAAGACAAAAGGAAAAGAAAGAGCAGGAATGTCAGAAGAACAGAGGCAA
GAGAAGACTAAGGATAAAGGGAAGGAAATACTGAGTAGCCAGACAAACATCACTATCACAAGGGACCAAAACAAGGGAAATCTGAACATAAGAGGGGAGTTGGAAAAAAA
AGAAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGCATGAACAGGAAACGAGCAGAGGCTCTGGGGAATTTGATAGGCAGCTTTGAAGACGTTGACTGGGATGAAGACGACAGAAGGGGAGAAAATTCTCTGAGATT
ACAAGTAAAGTTAGATATCACAAAGCCGCTGAAAAGAGGGTTGATGATCAGAGTGGGTACAAAAGCCGAAGAAGCATGGGTGAAAGTAACGTATGAAAGAATGCCAGATT
TTTGTTATAAATGTGGTATCATCGGACATGTTAAAGACGAATGTGAAAACCAGGTCGACCCAGAGGAAGAACATGATTATGGAGAATGGATGAGAAATATGACGACCCCG
ACAAGCCCGCATGTCTACAGAACTCCATCTTACAGAGCAAATTATGGATGGAACAAAGGAAGAGGCAGGGGTCGAGGAATGAGATCCTACGATTGGCGACAAACTGAACT
GAACAATAGAAATCAGAAAAACGAATATCATGGGTCTACTGCCGGAGAAACTGCCGGAAAACAGGTCGGAGACATCAGGGACGACCGGAGCAAAAGCAGAACAGAAGAGA
CAAGGAAAAAGCTCGAATCCCATAGCAGTACTGTTCCAACGGCTAATAAAGTGTCAGAGGACAAGACAAAAGGAAAAGAAAGAGCAGGAATGTCAGAAGAACAGAGGCAA
GAGAAGACTAAGGATAAAGGGAAGGAAATACTGAGTAGCCAGACAAACATCACTATCACAAGGGACCAAAACAAGGGAAATCTGAACATAAGAGGGGAGTTGGAAAAAAA
AGAAACCTGA
Protein sequenceShow/hide protein sequence
MVCMNRKRAEALGNLIGSFEDVDWDEDDRRGENSLRLQVKLDITKPLKRGLMIRVGTKAEEAWVKVTYERMPDFCYKCGIIGHVKDECENQVDPEEEHDYGEWMRNMTTP
TSPHVYRTPSYRANYGWNKGRGRGRGMRSYDWRQTELNNRNQKNEYHGSTAGETAGKQVGDIRDDRSKSRTEETRKKLESHSSTVPTANKVSEDKTKGKERAGMSEEQRQ
EKTKDKGKEILSSQTNITITRDQNKGNLNIRGELEKKET