CuGenDBv2

Gene ID	Lag0018912
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr5:36288911..36290555
RNA-Seq Expression	Lag0018912
Synteny	Lag0018912
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7593230.1 Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]

2.1e-57

41.28

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Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS +V   VA E T   LM+ L++ YEKPSANNKV+L+KK F+++M E   V +++NE  T++NQL SV+IEF DEV A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSALVMTKGKDKVDE-----ENESSSSRKKWKSRNEVECFYCRKKSHYK
         LL SLP+SW  M+  VSNS GN  LKF +V D  L EE+RR  + + ST  +  V  +G+D+         ++S + + + KSR  VEC+ C K  H+K
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSALVMTKGKDKVDE-----ENESSSSRKKWKSRNEVECFYCRKKSHYK

Query:  -----------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISIGKLADDGYM
                         +W+LDS AS H   DR++  ++  G++G V + NG      GIGD++LK   G    +  VR VP +  NLIS+G+L D G+ 
Subjt:  -----------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISIGKLADDGYM

Query:  CEFGSRQCKLKFGSQVVAVGHRKSALY
          FG    K+K GS VVA GH++ +LY
Subjt:  CEFGSRQCKLKFGSQVVAVGHRKSALY

TKR86343.1 hypothetical protein D5086_0000239010 [Populus alba]

4.3e-55

39.71

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG+V + +G      GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALY
         +K  LIS+G+L D G+   F     K+  G+ V+A G +   LY
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALY

TKS02608.1 hypothetical protein D5086_0000161380 [Populus alba]

3.3e-55

38.63

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Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG+V + +G   K  GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALYRC--QLNVAKGSKKQWMSVK
         +K  LIS+G+L D G+   F     K+  G+ V+A G +   L     +L V++ ++ +W ++K
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALYRC--QLNVAKGSKKQWMSVK

TKS09800.1 hypothetical protein D5086_0000089010 [Populus alba]

7.4e-55

39.83

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG+V + +G   K  GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL
         +K  LIS+G+L D G+   F     K+  G+ V+A G +   L
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL

TKS13843.1 hypothetical protein D5086_0000049350 [Populus alba]

1.6e-54

39.53

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Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG++ + +G      GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL
         +K  LIS+G+L D GY   F     K+  G+ V+A G +   L
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL

TrEMBL top hits

e value

%identity

Alignment

A0A4U5NTA0 CCHC-type domain-containing protein

2.1e-55

39.71

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG+V + +G      GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALY
         +K  LIS+G+L D G+   F     K+  G+ V+A G +   LY
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALY

A0A4U5PY83 CCHC-type domain-containing protein

1.6e-55

38.63

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG+V + +G   K  GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALYRC--QLNVAKGSKKQWMSVK
         +K  LIS+G+L D G+   F     K+  G+ V+A G +   L     +L V++ ++ +W ++K
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALYRC--QLNVAKGSKKQWMSVK

A0A4U5QGR0 Uncharacterized protein

3.6e-55

39.83

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG+V + +G   K  GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL
         +K  LIS+G+L D G+   F     K+  G+ V+A G +   L
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL

A0A4U5QS59 CCHC-type domain-containing protein

8.0e-55

39.53

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ SV  ++N   T+ NQL SV+IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG++ + +G      GIGDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL
         +K  LIS+G+L D GY   F     K+  G+ V+A G +   L
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL

A0A4V6XW18 CCHC-type domain-containing protein

1.0e-54

39.53

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M +E+W+ LD + +  IR+ LS  V   V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ASV  ++N   T+ NQL SV IEF DE+ A+
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY
         LL SLP SW  M+T VSNS G + LK+ ++ DL LAEE+RR  S + S+ GSAL + T+G+  D+      S S   S+ K+ SR +VEC+ C K  H+
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSAL-VMTKGK--DKVDEENESSS---SRKKWKSRNEVECFYCRKKSHY

Query:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP
                                            WILDS AS H      +  ++  G HG+V + +G      G GDV +KT  G    L++VR VP
Subjt:  K----------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVP

Query:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL
         +K  LIS+G+L D G+   F     K+  G+ V+A G +   L
Subjt:  NIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSAL

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.5e-37

31.72

Show/hide

Query:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI
        M  EDW  LDE A + IR+ LS DV + +  E TA  +   L + Y   +  NK+YL K+ + + MSE  +  S++N    LI QL ++ ++  +E  AI
Subjt:  MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAI

Query:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCD-LALAEEIRRHGSNKESTVGSALVMTKGKDKVDEENES----SSSRKKWKSRNEV---ECFYCRKKS
         LL SLP S+  + TT+ +  G  T++  +V   L L E++R+   N+    G AL+ T+G+ +  + + +    S +R K K+R++     C+ C +  
Subjt:  QLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCD-LALAEEIRRHGSNKESTVGSALVMTKGKDKVDEENES----SSSRKKWKSRNEV---ECFYCRKKS

Query:  HYK--------------------------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVS
        H+K                                                   W++D+AAS H    R LF  +  G  G V+MGN   SK  GIGD+ 
Subjt:  HYK--------------------------------------------------NWILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVS

Query:  LKTECGGKLVLRDVRFVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALYRCQLNVAKG
        +KT  G  LVL+DVR VP+++MNLIS   L  DGY   F +++ +L  GS V+A G  +  LYR    + +G
Subjt:  LKTECGGKLVLRDVRFVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALYRCQLNVAKG

P25601 Putative transposon Ty5-1 protein YCL075W

5.6e-05

36.99

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Query:  WILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISI
        WI D+  + H+  DRS+F+SFTR        G G +    G G V++     G + L DV +VP++ +NLIS+
Subjt:  WILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.1e-04

38.89

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Query:  NWILDSAASVHIASD---RSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISIGKLAD-DGYMCEF
        NW+LDS A+ HI SD    SL   +T G    V + +G T      G  SL T+    L L ++ +VPNI  NLIS+ +L + +G   EF
Subjt:  NWILDSAASVHIASD---RSLFTSFTRGHHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISIGKLAD-DGYMCEF

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

4.8e-04

22.09

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Query:  LVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEI--RRHGSNKESTVGSA
        L K+  +++M +  S +SY+++   ++ +L   K+E SD      + T+L  S+  +     +S     +   ++   +L E    R H S+ E  +   
Subjt:  LVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSWVTMKTTVSNSTGNNTLKFSEVCDLALAEEI--RRHGSNKESTVGSA

Query:  LVMTKGKDKVDE------ENESSSSRKKW-----KSRNEVECFYCRKKSHYKN----------WILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTS
        L   + K K ++      +N  +    K+     K   E E     +     N          WI+   A +++      FT+  R     V   +G   
Subjt:  LVMTKGKDKVDE------ENESSSSRKKW-----KSRNEVECFYCRKKSHYKN----------WILDSAASVHIASDRSLFTSFTRGHHGLVRMGNGRTS

Query:  KTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISIGKLADDGYMCEFG
           G GDV ++ + G K  +R+V FVP +  N++S GK+    Y    G
Subjt:  KTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISIGKLADDGYMCEFG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACAGACGAAGATTGGGAAGCTCTAGATGAAGAGGCAGTTGCAACCATAAGGATGTGTTTGTCAATGGATGTGACAAGTCTAGTAGCCCATGAGACAACTGCAGTCAA
ATTGATGGAAGCGCTTACAAACAAGTATGAAAAACCCTCTGCAAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATT
CCTATATTAATGAGGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGAATTTTCTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGG
GTAACGATGAAGACGACAGTGTCTAATTCGACTGGAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCTTAGCTGAGGAAATTCGTAGGCATGGTAGTAATAA
AGAGTCTACAGTAGGGTCAGCTTTGGTTATGACTAAAGGTAAAGATAAGGTTGATGAAGAAAATGAATCGAGTAGCAGTAGGAAAAAGTGGAAAAGTAGGAATGAGGTAG
AATGTTTTTACTGCCGTAAGAAAAGTCACTACAAGAATTGGATATTAGACAGTGCAGCTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAAGAGGG
CATCATGGCCTAGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGGTAAATTGGTACTGCGAGATGTCAG
GTTCGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAGTTGGCAGATGATGGTTACATGTGTGAGTTTGGTAGTCGCCAATGTAAACTCAAGTTCGGATCTCAGG
TAGTGGCAGTTGGTCACAGGAAATCTGCATTGTACAGATGTCAGTTGAATGTTGCCAAAGGTTCAAAGAAACAGTGGATGTCGGTTAAAGCTGCAGATGGTAATTGTAGA
GTTGTCAGACGCTCGAATGAATTGAAGAAGTCACTTAGGCGAGTTAAGGCATCAAAGTGGAAGGCCAGAGCAATTGCTAAGGTCAAAGGTCAGGTCTCTAGCTTGGTAAC
AGGTTTGAATAGAGGATTCAAGCCATTCTCAGAGTGTATCTTCTTCAGGAACAGTTGTTCGGATTGGAAAGAAGATGACAGGTATTTTGAGCCTTGGAGTTTACCAAAAA
GATCAAAGATAACAATTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGA

mRNA sequence

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Protein sequence

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MTDEDWEALDEEAVATIRMCLSMDVTSLVAHETTAVKLMEALTNKYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLINQLKSVKIEFSDEVNAIQLLTSLPDSW
VTMKTTVSNSTGNNTLKFSEVCDLALAEEIRRHGSNKESTVGSALVMTKGKDKVDEENESSSSRKKWKSRNEVECFYCRKKSHYKNWILDSAASVHIASDRSLFTSFTRG
HHGLVRMGNGRTSKTRGIGDVSLKTECGGKLVLRDVRFVPNIKMNLISIGKLADDGYMCEFGSRQCKLKFGSQVVAVGHRKSALYRCQLNVAKGSKKQWMSVKAADGNCR
VVRRSNELKKSLRRVKASKWKARAIAKVKGQVSSLVTGLNRGFKPFSECIFFRNSCSDWKEDDRYFEPWSLPKRSKITIVVGVDPWSLPR

Lag0018912 (gene) of Sponge gourd (AG-4) v1 genome