; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018914 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018914
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr5:36315113..36316132
RNA-Seq ExpressionLag0018914
SyntenyLag0018914
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]4.5e-0750.88Show/hide
Query:  HLCKSEDGRKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLE
        H   SE GRK+ IEER G R+ +L++++GT AW+R+CL+A  +  NP   WRRR LE
Subjt:  HLCKSEDGRKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLE

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]4.9e-2236.7Show/hide
Query:  RKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKGSEGDQLEE
        RK+ IEER G    +L++D GT AW+R+CL+    + N    W+RR LE  +IFFQVL N+KGRF +L LE  + RK+ I IPEG   R  G      E 
Subjt:  RKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKGSEGDQLEE

Query:  GVRKPNSFAKVVRKG----PKKGNE--------VINLSSEVG---ELAFDYSSTVIFERVNIDTQWMGIKEACSNVAKIRFILKPVCINLAVGLCGSEKE
            P S     + G    P K  E        V   + E G   E AF++ STVI +++   + W  +K+       I    K  C NLAVG+ GS+ E
Subjt:  GVRKPNSFAKVVRKG----PKKGNE--------VINLSSEVG---ELAFDYSSTVIFERVNIDTQWMGIKEACSNVAKIRFILKPVCINLAVGLCGSEKE

Query:  AKEIIDSCKGQQPEHFII
        AK  +    G  PE  ++
Subjt:  AKEIIDSCKGQQPEHFII

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein4.4e-0838.32Show/hide
Query:  LDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKGSEGDQ-------LEEGVRKPNSF
        +++D GT A +R+CL     + NP   W RR L+  +IFFQVL N +GRF +L LE  +G+K+ I I +G   + + S  ++       LE  +R   SF
Subjt:  LDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKGSEGDQ-------LEEGVRKPNSF

Query:  AKVVRKG
        A  V KG
Subjt:  AKVVRKG

A0A0A0KGZ5 Uncharacterized protein1.8e-0644.62Show/hide
Query:  GRKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQV-LSNKKG
        GRK+ IEE  G R  +L++++G  AW+ +CL+A  +  NP G W RR LE   IFFQ  L  ++G
Subjt:  GRKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQV-LSNKKG

A0A0A0LY03 Uncharacterized protein4.2e-1142.39Show/hide
Query:  RKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKG
        RK+ IEER G +  +LD+D+GT  W+ + L A   +    G W+R+KL+  +IFFQVL N   RF ++ L+  +GRK+ + I EG   RE G
Subjt:  RKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKG

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X22.2e-0750.88Show/hide
Query:  HLCKSEDGRKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLE
        H   SE GRK+ IEER G R+ +L++++GT AW+R+CL+A  +  NP   WRRR LE
Subjt:  HLCKSEDGRKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLE

A0A5D3CQQ0 Uncharacterized protein2.4e-2236.7Show/hide
Query:  RKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKGSEGDQLEE
        RK+ IEER G    +L++D GT AW+R+CL+    + N    W+RR LE  +IFFQVL N+KGRF +L LE  + RK+ I IPEG   R  G      E 
Subjt:  RKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNRGRKSSICIPEGQNCREKGSEGDQLEE

Query:  GVRKPNSFAKVVRKG----PKKGNE--------VINLSSEVG---ELAFDYSSTVIFERVNIDTQWMGIKEACSNVAKIRFILKPVCINLAVGLCGSEKE
            P S     + G    P K  E        V   + E G   E AF++ STVI +++   + W  +K+       I    K  C NLAVG+ GS+ E
Subjt:  GVRKPNSFAKVVRKG----PKKGNE--------VINLSSEVG---ELAFDYSSTVIFERVNIDTQWMGIKEACSNVAKIRFILKPVCINLAVGLCGSEKE

Query:  AKEIIDSCKGQQPEHFII
        AK  +    G  PE  ++
Subjt:  AKEIIDSCKGQQPEHFII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATTTCCATACAACCAAGTGTGTTGTCCTTGGGTATTGGGATCAGTGGAAAGAAGGTGAACATCGATTGGAGGTGTTTCACCTTTGTAAGAGTGAGGATGGGAG
GAAGGTACTTATTGAGGAGAGGCGTGGATCGAGAACGAGTCGCTTGGACGTGGACGTGGGTACTTTCGCTTGGATTAGGAATTGTCTTATGGCAGTGACGAAGTCAGAGA
ACCCAAATGGACTCTGGAGAAGGAGGAAACTAGAGGCTGTGTTAATATTCTTTCAGGTGCTATCCAACAAGAAGGGAAGGTTCGGGCTTCTTCCTCTAGAATTGAATAGG
GGAAGGAAATCTTCTATCTGCATCCCCGAGGGTCAGAACTGCAGAGAGAAAGGAAGTGAAGGAGACCAGCTTGAGGAAGGGGTTCGAAAACCCAACTCTTTTGCAAAAGT
AGTGAGAAAGGGACCTAAGAAAGGAAACGAGGTGATTAATTTATCATCGGAAGTGGGGGAGCTTGCCTTCGACTACTCCTCGACGGTCATCTTTGAGAGGGTCAACATCG
ACACTCAATGGATGGGTATAAAAGAAGCGTGCTCAAATGTGGCAAAAATAAGGTTCATTCTCAAACCCGTTTGCATTAACCTAGCAGTGGGTCTTTGCGGGAGCGAGAAA
GAAGCCAAGGAGATAATCGATTCATGTAAGGGGCAGCAACCAGAGCATTTCATAATCCATCTGTGGGATTGCAACCTGTTAGCGAGAGGAAACGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATTTCCATACAACCAAGTGTGTTGTCCTTGGGTATTGGGATCAGTGGAAAGAAGGTGAACATCGATTGGAGGTGTTTCACCTTTGTAAGAGTGAGGATGGGAG
GAAGGTACTTATTGAGGAGAGGCGTGGATCGAGAACGAGTCGCTTGGACGTGGACGTGGGTACTTTCGCTTGGATTAGGAATTGTCTTATGGCAGTGACGAAGTCAGAGA
ACCCAAATGGACTCTGGAGAAGGAGGAAACTAGAGGCTGTGTTAATATTCTTTCAGGTGCTATCCAACAAGAAGGGAAGGTTCGGGCTTCTTCCTCTAGAATTGAATAGG
GGAAGGAAATCTTCTATCTGCATCCCCGAGGGTCAGAACTGCAGAGAGAAAGGAAGTGAAGGAGACCAGCTTGAGGAAGGGGTTCGAAAACCCAACTCTTTTGCAAAAGT
AGTGAGAAAGGGACCTAAGAAAGGAAACGAGGTGATTAATTTATCATCGGAAGTGGGGGAGCTTGCCTTCGACTACTCCTCGACGGTCATCTTTGAGAGGGTCAACATCG
ACACTCAATGGATGGGTATAAAAGAAGCGTGCTCAAATGTGGCAAAAATAAGGTTCATTCTCAAACCCGTTTGCATTAACCTAGCAGTGGGTCTTTGCGGGAGCGAGAAA
GAAGCCAAGGAGATAATCGATTCATGTAAGGGGCAGCAACCAGAGCATTTCATAATCCATCTGTGGGATTGCAACCTGTTAGCGAGAGGAAACGGCTAG
Protein sequenceShow/hide protein sequence
MFDFHTTKCVVLGYWDQWKEGEHRLEVFHLCKSEDGRKVLIEERRGSRTSRLDVDVGTFAWIRNCLMAVTKSENPNGLWRRRKLEAVLIFFQVLSNKKGRFGLLPLELNR
GRKSSICIPEGQNCREKGSEGDQLEEGVRKPNSFAKVVRKGPKKGNEVINLSSEVGELAFDYSSTVIFERVNIDTQWMGIKEACSNVAKIRFILKPVCINLAVGLCGSEK
EAKEIIDSCKGQQPEHFIIHLWDCNLLARGNG