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Lag0018933 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018933
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:36716885..36717997
RNA-Seq ExpressionLag0018933
SyntenyLag0018933
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5515315.1 hypothetical protein RHGRI_036380 [Rhododendron griersonianum]1.0e-2039.23Show/hide
Query:  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRL
        ED++F +   W   H LP       + EAI SL+GK++   + A   S +   LR++I ID+ +PLK+G FLK     ED W+   YE+LSDFCY CG +
Subjt:  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRL

Query:  GHTIKECEEQISSAEEELLYGAFLREPVRL
        GH + +C ++ +    EL YG+FLR  + +
Subjt:  GHTIKECEEQISSAEEELLYGAFLREPVRL

KAG5542538.1 hypothetical protein RHGRI_022172 [Rhododendron griersonianum]1.0e-2039.23Show/hide
Query:  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRL
        ED++F +   W   H LP       + EAI SL+GK++   + A   S +   LR++I ID+ +PLK+G FLK     ED W+   YE+LSDFCY CG +
Subjt:  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRL

Query:  GHTIKECEEQISSAEEELLYGAFLREPVRL
        GH + +C ++ +    EL YG+FLR  + +
Subjt:  GHTIKECEEQISSAEEELLYGAFLREPVRL

KAG5556475.1 hypothetical protein RHGRI_006921 [Rhododendron griersonianum]1.0e-2039.23Show/hide
Query:  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRL
        ED++F +   W   H LP       + EAI SL+GK++   + A   S +   LR++I ID+ +PLK+G FLK     ED W+   YE+LSDFCY CG +
Subjt:  EDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRL

Query:  GHTIKECEEQISSAEEELLYGAFLREPVRL
        GH + +C ++ +    EL YG+FLR  + +
Subjt:  GHTIKECEEQISSAEEELLYGAFLREPVRL

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.7e-2438.95Show/hide
Query:  DMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLG
        DM F + + W   H +P+ C +T     +G+ LG VE+++ G  +D   G  +RV++ IDV +PL+RGI LK+ S+G+D W P+ YEKL DFCY CG++G
Subjt:  DMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLG

Query:  HTIKECEE--QISSAEEELLYGAFLREPVRLRHEERGPPTENLQGR----GRG---RGAFGGRGRWRY--EHFDDEEDGETKSHEQFVEQ
        H+ +ECE+  ++ +      YG +LR    L  +    P E +  R    GRG    G  GGRG WR   E++ D  DG   SH + VE+
Subjt:  HTIKECEE--QISSAEEELLYGAFLREPVRLRHEERGPPTENLQGR----GRG---RGAFGGRGRWRY--EHFDDEEDGETKSHEQFVEQ

XP_042979975.1 uncharacterized protein LOC122310162 [Carya illinoinensis]2.3e-2038.41Show/hide
Query:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY
        +++ +E  G    + + F   S W  FH LP +C T    E IGS +G+VE+VD+  +  S WG+ LRV+IH+D+ +PL RG  L     G + WIP +Y
Subjt:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY

Query:  EKLSDFCYGCGRLGHTIKECEEQISSAEEELLYGAFLR
        EK+   C+ CG + H + EC+E      +E  YG +LR
Subjt:  EKLSDFCYGCGRLGHTIKECEEQISSAEEELLYGAFLR

TrEMBL top hitse value%identityAlignment
A0A5C7GZQ4 CCHC-type domain-containing protein2.5e-2035.46Show/hide
Query:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY
        +L+ EEP G     +M+F  V+ W   HK+P  C T+     +GS++G+V+++D G   D   G+ +RV++ +DV +PL+R + +    +G++  + + Y
Subjt:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY

Query:  EKLSDFCYGCGRLGHTIKECEEQISSAEEE---LLYGAFLR
        E+L D CY CGR+GH +++C    SS E E   L++G++LR
Subjt:  EKLSDFCYGCGRLGHTIKECEEQISSAEEE---LLYGAFLR

A0A5C7H9Y2 CCHC-type domain-containing protein9.6e-2032.32Show/hide
Query:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY
        +L+  E  G     D++FRYV  W   H LP AC        +G L+G+V+++D G ES    G+ +R+++ IDV  PLKRG+ +  G + +   + + Y
Subjt:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY

Query:  EKLSDFCYGCGRLGHTIKEC---EEQISSAEEELLYGAFLREPVRLRHEERGPPTENLQGRGRG
        E+L +FCY CG++GH +++C    ++I+S+     +G ++R   R R +  G    + +G   G
Subjt:  EKLSDFCYGCGRLGHTIKEC---EEQISSAEEELLYGAFLREPVRLRHEERGPPTENLQGRGRG

A0A5C7HBH6 CCHC-type domain-containing protein9.6e-2031.93Show/hide
Query:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY
        +++ E P+G      ++F     W   H++P  C      + +   +G+V  V+I +ES   WGR LRVK+ ID+ +PLKR + LK G + E   + + Y
Subjt:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY

Query:  EKLSDFCYGCGRLGHTIKECEEQISSAE----EELLYGAFLREPVRLRHEERGPPTENLQGRGRGR
        E++ +FC+ CGRLGH IKEC ++ +  +      + YG++L+ P+  + + RG    N     R +
Subjt:  EKLSDFCYGCGRLGHTIKECEEQISSAE----EELLYGAFLREPVRLRHEERGPPTENLQGRGRGR

A0A6J1BSZ1 uncharacterized protein LOC1110054811.9e-2038.13Show/hide
Query:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY
        +++ + P       DM+FR VS+W HF  L  AC        +G+ +G  E V+  A +   WG  LRV++  DV +PL RGI L         WIP+ Y
Subjt:  MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTY

Query:  EKLSDFCYGCGRLGHTIKECEE-QISSAEEELLYGAFLR
        E+L DF Y CGRL H +K+C +  + S  + L YG +LR
Subjt:  EKLSDFCYGCGRLGHTIKECEE-QISSAEEELLYGAFLR

A0A6J1D765 uncharacterized protein LOC1110179021.3e-2438.95Show/hide
Query:  DMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLG
        DM F + + W   H +P+ C +T     +G+ LG VE+++ G  +D   G  +RV++ IDV +PL+RGI LK+ S+G+D W P+ YEKL DFCY CG++G
Subjt:  DMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGCGRLG

Query:  HTIKECEE--QISSAEEELLYGAFLREPVRLRHEERGPPTENLQGR----GRG---RGAFGGRGRWRY--EHFDDEEDGETKSHEQFVEQ
        H+ +ECE+  ++ +      YG +LR    L  +    P E +  R    GRG    G  GGRG WR   E++ D  DG   SH + VE+
Subjt:  HTIKECEE--QISSAEEELLYGAFLREPVRLRHEERGPPTENLQGR----GRG---RGAFGGRGRWRY--EHFDDEEDGETKSHEQFVEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATTATTCGAGGAACCCAAAGGCGGCATCTGCAGCGAAGACATGGAGTTCAGGTACGTTTCTATATGGACTCACTTTCATAAATTACCTTATGCTTGTTTTACTAC
GGCATCTACAGAAGCGATTGGTAGTCTCCTTGGGAAGGTTGAAAAAGTGGATATAGGGGCTGAATCAGATTCGGAATGGGGTCGGTCATTGAGAGTTAAAATTCATATTG
ATGTCCAGCGACCTCTAAAACGCGGGATATTTTTAAAATCAGGGAGTAATGGAGAAGATAAATGGATCCCTGTTACGTATGAGAAGCTTTCGGATTTTTGTTATGGGTGT
GGACGATTGGGGCACACTATTAAAGAATGTGAGGAACAAATCAGCTCTGCCGAAGAGGAACTTCTATACGGTGCTTTTCTTCGTGAACCAGTCCGTCTAAGGCACGAGGA
AAGAGGACCTCCAACAGAAAATCTTCAAGGTAGAGGTAGGGGACGGGGAGCTTTTGGAGGACGAGGAAGATGGCGATATGAACACTTTGATGATGAAGAGGATGGAGAAA
CAAAATCCCATGAACAATTTGTGGAACAACCAAAACGGGTGGCGCCCCACCATACGCCGCCGTCTAGCGGTGGATCTCAGTCGGAGAGGACTAAGTCAAGCAAGGAAACG
GTAGGATTCACAATTAAGGAAGGAGATCCTAGTAACGGAAAAATAATTCAAGAGGGTGGCGTTAGTTCAGGGAATAATGGGGGGTCAGAAGGAAAAAACGGAAATCAAGG
AATCATAGGTGATAAATGCTTAAGCGGTGATAATTCTCAAATTTGTTCCAACGGTTCTACAAGTCAAAGTTCACAAATGGAAATAGATGCAAAACCTCACGTGGTAATAG
ATGACAGCTTGGAACAAAAGAACCAAGTGATAAATGTTAATGGGATCCAAAATGATGGGCCATCTATTGGGCTTACTCCTAAAGAGCCAGTAAAGGCCAAAGTATGGAAA
AGGCATATACGAGAAAACAAGGCTGCAAGCAATAACTTAAAAAACCCATCGGATACTCAGCAGATGAGTGGGTTGAAACATAAGGCTGAGTGTGATATTGAAGGTGTTAA
GGAAGCTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTATTATTCGAGGAACCCAAAGGCGGCATCTGCAGCGAAGACATGGAGTTCAGGTACGTTTCTATATGGACTCACTTTCATAAATTACCTTATGCTTGTTTTACTAC
GGCATCTACAGAAGCGATTGGTAGTCTCCTTGGGAAGGTTGAAAAAGTGGATATAGGGGCTGAATCAGATTCGGAATGGGGTCGGTCATTGAGAGTTAAAATTCATATTG
ATGTCCAGCGACCTCTAAAACGCGGGATATTTTTAAAATCAGGGAGTAATGGAGAAGATAAATGGATCCCTGTTACGTATGAGAAGCTTTCGGATTTTTGTTATGGGTGT
GGACGATTGGGGCACACTATTAAAGAATGTGAGGAACAAATCAGCTCTGCCGAAGAGGAACTTCTATACGGTGCTTTTCTTCGTGAACCAGTCCGTCTAAGGCACGAGGA
AAGAGGACCTCCAACAGAAAATCTTCAAGGTAGAGGTAGGGGACGGGGAGCTTTTGGAGGACGAGGAAGATGGCGATATGAACACTTTGATGATGAAGAGGATGGAGAAA
CAAAATCCCATGAACAATTTGTGGAACAACCAAAACGGGTGGCGCCCCACCATACGCCGCCGTCTAGCGGTGGATCTCAGTCGGAGAGGACTAAGTCAAGCAAGGAAACG
GTAGGATTCACAATTAAGGAAGGAGATCCTAGTAACGGAAAAATAATTCAAGAGGGTGGCGTTAGTTCAGGGAATAATGGGGGGTCAGAAGGAAAAAACGGAAATCAAGG
AATCATAGGTGATAAATGCTTAAGCGGTGATAATTCTCAAATTTGTTCCAACGGTTCTACAAGTCAAAGTTCACAAATGGAAATAGATGCAAAACCTCACGTGGTAATAG
ATGACAGCTTGGAACAAAAGAACCAAGTGATAAATGTTAATGGGATCCAAAATGATGGGCCATCTATTGGGCTTACTCCTAAAGAGCCAGTAAAGGCCAAAGTATGGAAA
AGGCATATACGAGAAAACAAGGCTGCAAGCAATAACTTAAAAAACCCATCGGATACTCAGCAGATGAGTGGGTTGAAACATAAGGCTGAGTGTGATATTGAAGGTGTTAA
GGAAGCTCATTAG
Protein sequenceShow/hide protein sequence
MLLFEEPKGGICSEDMEFRYVSIWTHFHKLPYACFTTASTEAIGSLLGKVEKVDIGAESDSEWGRSLRVKIHIDVQRPLKRGIFLKSGSNGEDKWIPVTYEKLSDFCYGC
GRLGHTIKECEEQISSAEEELLYGAFLREPVRLRHEERGPPTENLQGRGRGRGAFGGRGRWRYEHFDDEEDGETKSHEQFVEQPKRVAPHHTPPSSGGSQSERTKSSKET
VGFTIKEGDPSNGKIIQEGGVSSGNNGGSEGKNGNQGIIGDKCLSGDNSQICSNGSTSQSSQMEIDAKPHVVIDDSLEQKNQVINVNGIQNDGPSIGLTPKEPVKAKVWK
RHIRENKAASNNLKNPSDTQQMSGLKHKAECDIEGVKEAH