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Lag0018934 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018934
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr5:36723026..36724114
RNA-Seq ExpressionLag0018934
SyntenyLag0018934
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAM01179.2 Putative retroelement [Oryza sativa Japonica Group]7.6e-1322.11Show/hide
Query:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW
        + S ++  +G W  D I   F P + + I N  +      D I W+ D  G +SV+SAYHL  ++    + +SS  + +S  W + WK       K+   
Subjt:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW

Query:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-
          I +       D + +   E+++ + ++++W +W  RN+I H    P ++     +ES +              E+  ++  V  +KL   K       
Subjt:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-

Query:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS
         +W+   PGS  L+VD S  +S  +GG+                        A+   L +     A   +  + P+V+ +D  ++++L   +    SE++
Subjt:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS

Query:  FLV
        FL+
Subjt:  FLV

ABB46931.2 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]7.6e-1322.11Show/hide
Query:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW
        + S ++  +G W  D I   F P + + I N  +      D I W+ D  G +SV+SAYHL  ++    + +SS  + +S  W + WK       K+   
Subjt:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW

Query:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-
          I +       D + +   E+++ + ++++W +W  RN+I H    P ++     +ES +              E+  ++  V  +KL   K       
Subjt:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-

Query:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS
         +W+   PGS  L+VD S  +S  +GG+                        A+   L +     A   +  + P+V+ +D  ++++L   +    SE++
Subjt:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS

Query:  FLV
        FL+
Subjt:  FLV

EPS58663.1 hypothetical protein M569_16150, partial [Genlisea aurea]2.8e-1527.24Show/hide
Query:  ILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSS--IQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRI
        I+   G W +  + + F P + + I +  +   +S+D++IWN+   GIYSVKS YHL  S  +Q+ S A+SS A  +  LWKS WK+   PK  +  WR+
Subjt:  ILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSS--IQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRI

Query:  I-------HDFG--------------------------TFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLN
                H+ G                          TF++ D+   +L  E++E  ++ +W LW +RN   +  T+   +    A+E  I        
Subjt:  I-------HDFG--------------------------TFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLN

Query:  GVDYRKLSRSKTQTSQAQWIPLAPGSWMLSVDASRVDSQNR--GGL
         +  R+   +   T Q +W P + G   L+ D+  +  Q    GGL
Subjt:  GVDYRKLSRSKTQTSQAQWIPLAPGSWMLSVDASRVDSQNR--GGL

OMO54874.1 reverse transcriptase [Corchorus capsularis]5.3e-1424.27Show/hide
Query:  SAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRI
        S+++   G W  D++ +   P +   I    +  +  +D +IWN    GIY++KS YH+   +    K  SS+ D   S W   W    +PK K   WR+
Subjt:  SAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRI

Query:  IHD---------------------------FGTFDYWDWINEKLKE-EELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNGVDYR
        +H+                           +G  D+WD + EK  +   +E+ +  +W LW +RNK  H +      +L T+V   +SE      G   R
Subjt:  IHD---------------------------FGTFDYWDWINEKLKE-EELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNGVDYR

Query:  KLSRSKTQTSQAQWIPLAPGSWMLSVDASRVDSQNRGGL
        +    + Q   + W+P    ++ ++ DA+        GL
Subjt:  KLSRSKTQTSQAQWIPLAPGSWMLSVDASRVDSQNRGGL

XP_022149515.1 uncharacterized protein LOC111017927 [Momordica charantia]1.3e-1231.49Show/hide
Query:  IYASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICA
        +Y  A++    +W E +I +SF   E   I N  +      DE+IW  D K  +SVKS Y L   + S  +  +S ++E +  WK  W+     K KIC 
Subjt:  IYASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICA

Query:  WRIIHDFGTFDYWDWINEK----------LKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNG
        WRI +D         +N+K           K+EE E +  I    W  RN I HS   P++ +LI  +E  I  R++ L G
Subjt:  WRIIHDFGTFDYWDWINEK----------LKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNG

TrEMBL top hitse value%identityAlignment
A0A6J1D5Y4 uncharacterized protein LOC1110179276.3e-1331.49Show/hide
Query:  IYASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICA
        +Y  A++    +W E +I +SF   E   I N  +      DE+IW  D K  +SVKS Y L   + S  +  +S ++E +  WK  W+     K KIC 
Subjt:  IYASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICA

Query:  WRIIHDFGTFDYWDWINEK----------LKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNG
        WRI +D         +N+K           K+EE E +  I    W  RN I HS   P++ +LI  +E  I  R++ L G
Subjt:  WRIIHDFGTFDYWDWINEK----------LKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNG

A0A803P0J9 Uncharacterized protein2.6e-1425.42Show/hide
Query:  GIYASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKIC
        G+ A+ +++ N +W   ++   F   + + I    +    + D +IW+    G Y+VKS YH+ +S++  S    S++   SS W+ FW +   PK KI 
Subjt:  GIYASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKIC

Query:  AWRIIHDF-----------GTFDYWDWINEKL--------------KEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNGVDY
        AWR+IHD              +  +DW N  L               + E+E+    +W +W  RN++ H      +ISL       +    NY      
Subjt:  AWRIIHDF-----------GTFDYWDWINEKL--------------KEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNGVDY

Query:  R------KLSRSKTQTSQAQWIPLAPGSWMLSVDAS
                ++ +     Q  WIP   GS+ L+VDA+
Subjt:  R------KLSRSKTQTSQAQWIPLAPGSWMLSVDAS

Q33AJ4 Retrotransposon protein, putative, unclassified3.7e-1322.11Show/hide
Query:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW
        + S ++  +G W  D I   F P + + I N  +      D I W+ D  G +SV+SAYHL  ++    + +SS  + +S  W + WK       K+   
Subjt:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW

Query:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-
          I +       D + +   E+++ + ++++W +W  RN+I H    P ++     +ES +              E+  ++  V  +KL   K       
Subjt:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-

Query:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS
         +W+   PGS  L+VD S  +S  +GG+                        A+   L +     A   +  + P+V+ +D  ++++L   +    SE++
Subjt:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS

Query:  FLV
        FL+
Subjt:  FLV

Q8S5K1 Putative retroelement3.7e-1322.11Show/hide
Query:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW
        + S ++  +G W  D I   F P + + I N  +      D I W+ D  G +SV+SAYHL  ++    + +SS  + +S  W + WK       K+   
Subjt:  YASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAW

Query:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-
          I +       D + +   E+++ + ++++W +W  RN+I H    P ++     +ES +              E+  ++  V  +KL   K       
Subjt:  RIIHDFGTFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKI-------------SERDNYLNGVDYRKLSRSKTQTSQA-

Query:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS
         +W+   PGS  L+VD S  +S  +GG+                        A+   L +     A   +  + P+V+ +D  ++++L   +    SE++
Subjt:  -QWIPLAPGSWMLSVDASRVDSQNRGGLE---------------------MRAILEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEIS

Query:  FLV
        FL+
Subjt:  FLV

S8D7I6 Uncharacterized protein (Fragment)1.4e-1527.24Show/hide
Query:  ILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSS--IQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRI
        I+   G W +  + + F P + + I +  +   +S+D++IWN+   GIYSVKS YHL  S  +Q+ S A+SS A  +  LWKS WK+   PK  +  WR+
Subjt:  ILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSS--IQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRI

Query:  I-------HDFG--------------------------TFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLN
                H+ G                          TF++ D+   +L  E++E  ++ +W LW +RN   +  T+   +    A+E  I        
Subjt:  I-------HDFG--------------------------TFDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLN

Query:  GVDYRKLSRSKTQTSQAQWIPLAPGSWMLSVDASRVDSQNR--GGL
         +  R+   +   T Q +W P + G   L+ D+  +  Q    GGL
Subjt:  GVDYRKLSRSKTQTSQAQWIPLAPGSWMLSVDASRVDSQNR--GGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.8e-0529.35Show/hide
Query:  WREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRII
        W +  I      S+H  I    +   K  D+IIWN++  G Y+V+S Y L++   S +  A +    S  L    W +  +PK K   WR +
Subjt:  WREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAATATATGCGTCTGCCATCCTATCTAATAACGGCAAGTGGAGAGAAGATATTATCATTGATAGCTTCTGCCCGTCCGAGCATCAAGAGATCAAGAATACCATAGTTGG
GGGGATAAAGTCAAAAGATGAAATCATTTGGAACTTCGATCCTAAAGGCATTTATTCTGTTAAAAGTGCTTATCATCTAGTCTCATCTATCCAGAGTCATTCTAAAGCTG
CCTCCTCTATTGCGGATGAGTCAAGCTCTCTGTGGAAGAGCTTCTGGAAAATTAAAACCATTCCTAAGGCTAAGATTTGTGCTTGGAGAATTATCCACGATTTTGGAACT
TTCGACTACTGGGATTGGATTAACGAAAAGCTTAAAGAAGAAGAGTTGGAAGTAGCTGTCTTAATCGTTTGGGCACTGTGGGAGCACAGAAACAAAATTTCTCATAGTTC
AACCACGCCTAGCCTGATCTCTCTAATTACAGCAGTTGAATCAAAAATTTCAGAAAGGGATAATTACCTCAATGGAGTCGATTACAGGAAGCTTTCAAGATCGAAGACCC
AGACGAGTCAAGCCCAATGGATCCCGCTGGCCCCCGGTTCTTGGATGCTCAGTGTTGATGCCTCTCGTGTTGATTCTCAAAACAGAGGAGGGTTGGAGATGAGGGCGATC
CTCGAATATCTTAGAAGCTTACCTACTGTGAGAGCTTCGCGCCAAAAGTTGGATATTCCGCCGGTGGTTGTCGTCTCTGATGCTACCAGTGTAGTTAATCTGCTGAACAA
ATCCGATGCTGATTTATCGGAAATCTCTTTCTTAGTCTAG
mRNA sequenceShow/hide mRNA sequence
GGAATATATGCGTCTGCCATCCTATCTAATAACGGCAAGTGGAGAGAAGATATTATCATTGATAGCTTCTGCCCGTCCGAGCATCAAGAGATCAAGAATACCATAGTTGG
GGGGATAAAGTCAAAAGATGAAATCATTTGGAACTTCGATCCTAAAGGCATTTATTCTGTTAAAAGTGCTTATCATCTAGTCTCATCTATCCAGAGTCATTCTAAAGCTG
CCTCCTCTATTGCGGATGAGTCAAGCTCTCTGTGGAAGAGCTTCTGGAAAATTAAAACCATTCCTAAGGCTAAGATTTGTGCTTGGAGAATTATCCACGATTTTGGAACT
TTCGACTACTGGGATTGGATTAACGAAAAGCTTAAAGAAGAAGAGTTGGAAGTAGCTGTCTTAATCGTTTGGGCACTGTGGGAGCACAGAAACAAAATTTCTCATAGTTC
AACCACGCCTAGCCTGATCTCTCTAATTACAGCAGTTGAATCAAAAATTTCAGAAAGGGATAATTACCTCAATGGAGTCGATTACAGGAAGCTTTCAAGATCGAAGACCC
AGACGAGTCAAGCCCAATGGATCCCGCTGGCCCCCGGTTCTTGGATGCTCAGTGTTGATGCCTCTCGTGTTGATTCTCAAAACAGAGGAGGGTTGGAGATGAGGGCGATC
CTCGAATATCTTAGAAGCTTACCTACTGTGAGAGCTTCGCGCCAAAAGTTGGATATTCCGCCGGTGGTTGTCGTCTCTGATGCTACCAGTGTAGTTAATCTGCTGAACAA
ATCCGATGCTGATTTATCGGAAATCTCTTTCTTAGTCTAG
Protein sequenceShow/hide protein sequence
GIYASAILSNNGKWREDIIIDSFCPSEHQEIKNTIVGGIKSKDEIIWNFDPKGIYSVKSAYHLVSSIQSHSKAASSIADESSSLWKSFWKIKTIPKAKICAWRIIHDFGT
FDYWDWINEKLKEEELEVAVLIVWALWEHRNKISHSSTTPSLISLITAVESKISERDNYLNGVDYRKLSRSKTQTSQAQWIPLAPGSWMLSVDASRVDSQNRGGLEMRAI
LEYLRSLPTVRASRQKLDIPPVVVVSDATSVVNLLNKSDADLSEISFLV