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Lag0018942 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018942
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA cross-link repair 1A protein
Genome locationchr5:36817854..36819906
RNA-Seq ExpressionLag0018942
SyntenyLag0018942
Gene Ontology termsGO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0031848 - protection from non-homologous end joining at telomere (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0035312 - 5'-3' exodeoxyribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591500.1 DNA cross-link repair 1A protein, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2376.62Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
KAG7024385.1 DNA cross-link repair 1A protein [Cucurbita argyrosperma subsp. argyrosperma]2.0e-2375.32Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSD+QRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
XP_022976979.1 DNA cross-link repair 1A protein isoform X1 [Cucurbita maxima]2.0e-2376.62Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
XP_022976980.1 uncharacterized protein LOC111477185 isoform X2 [Cucurbita maxima]2.0e-2376.62Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
XP_023536639.1 DNA cross-link repair 1A protein [Cucurbita pepo subsp. pepo]8.9e-2476.62Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
TrEMBL top hitse value%identityAlignment
A0A6J1CCT1 DNA cross-link repair 1A protein-like isoform X14.5e-2173.53Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDS
        ++NLHSQ+DEED ++GV F TEET FPVDEEGLIQCPLCGVDISDLSD++R VHTNDCID+ED    +
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDS
A0A6J1CG29 DNA cross-link repair 1A protein-like isoform X26.9e-2263.41Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQPLIDE
        ++NLHSQ+DEED ++GV F TEET FPVDEEGLIQCPLCGVDISDLSD++R VHTNDCID+ED    +V   +++ Q  + +
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQPLIDE
A0A6J1F758 DNA cross-link repair 1A protein9.6e-2476.62Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
A0A6J1IKZ9 uncharacterized protein LOC111477185 isoform X29.6e-2476.62Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
A0A6J1IQ65 DNA cross-link repair 1A protein isoform X19.6e-2476.62Show/hide
Query:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
        ++NLHSQLDEEDRISGVGF TEE+ FPVDE+ LIQCPLCGVDISDLSDEQRLVHTNDCIDKEDA   +     +K Q
Subjt:  MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45700.1 sterile alpha motif (SAM) domain-containing protein4.0e-0637.93Show/hide
Query:  FPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDK---EDASVDSVTEASEKIQPLIDELWNKERVDAASEVFKVVLVELEVAKYL
        F + ++  IQCPLC +DIS LS+EQR VH+N C+DK   + +  DS+ +  E +  LI     KE +D   ++ ++V     V K+L
Subjt:  FPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDK---EDASVDSVTEASEKIQPLIDELWNKERVDAASEVFKVVLVELEVAKYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAATCTGCATTCGCAACTGGATGAAGAAGACCGTATTAGTGGAGTGGGATTTGATACTGAGGAAACAGTTTTTCCGGTGGATGAAGAAGGTCTGATTCAATGTCC
TCTATGTGGGGTTGATATTTCTGATCTCAGTGACGAGCAACGTCTTGTACACACCAATGATTGTATCGACAAAGAGGATGCTTCAGTTGATAGTGTAACCGAAGCTTCAG
AAAAAATACAACCACTAATTGATGAGTTGTGGAACAAGGAGCGAGTTGATGCTGCTTCTGAAGTTTTTAAGGTCGTTTTGGTTGAGTTGGAGGTTGCGAAATACTTGGTT
ATGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAATCTGCATTCGCAACTGGATGAAGAAGACCGTATTAGTGGAGTGGGATTTGATACTGAGGAAACAGTTTTTCCGGTGGATGAAGAAGGTCTGATTCAATGTCC
TCTATGTGGGGTTGATATTTCTGATCTCAGTGACGAGCAACGTCTTGTACACACCAATGATTGTATCGACAAAGAGGATGCTTCAGTTGATAGTGTAACCGAAGCTTCAG
AAAAAATACAACCACTAATTGATGAGTTGTGGAACAAGGAGCGAGTTGATGCTGCTTCTGAAGTTTTTAAGGTCGTTTTGGTTGAGTTGGAGGTTGCGAAATACTTGGTT
ATGCTTTGA
Protein sequenceShow/hide protein sequence
MINLHSQLDEEDRISGVGFDTEETVFPVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDASVDSVTEASEKIQPLIDELWNKERVDAASEVFKVVLVELEVAKYLV
ML