CuGenDBv2

Gene ID	Lag0018947
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	nucleolar protein 56-like
Genome location	chr5:36904009..36904453
RNA-Seq Expression	Lag0018947
Synteny	Lag0018947
Gene Ontology terms	GO:0016310 - phosphorylation (biological process) GO:0042254 - ribosome biogenesis (biological process) GO:0046940 - nucleoside monophosphate phosphorylation (biological process) GO:0005730 - nucleolus (cellular component) GO:0031428 - box C/D snoRNP complex (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0004017 - adenylate kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0030515 - snoRNA binding (molecular function)
InterPro domains	IPR012974 - NOP5, N-terminal IPR045056 - Nucleolar protein Nop56/Nop58

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138057.1 nucleolar protein 56 [Cucumis sativus]

2.5e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

XP_022135070.1 nucleolar protein 56-like [Momordica charantia]

2.5e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

XP_022921711.1 nucleolar protein 56-like [Cucurbita moschata]

2.5e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

XP_022987378.1 nucleolar protein 56-like [Cucurbita maxima]

2.5e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

XP_023516172.1 nucleolar protein 56-like [Cucurbita pepo subsp. pepo]

1.9e-29

97.14

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA6 Nop domain-containing protein

1.2e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

A0A5A7UW47 ATP:AMP phosphotransferase

1.2e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

A0A6J1C032 nucleolar protein 56-like

1.2e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

A0A6J1E253 nucleolar protein 56-like

1.2e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

A0A6J1JJA2 nucleolar protein 56-like

1.2e-29

95.71

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        MTSTYLLYESASGYALFHAHGLDEIGQNTEA+RSSVSDLNRFGKVVKLA FHPFE ALDALKQCNSVSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

SwissProt top hits

e value

%identity

Alignment

O00567 Nucleolar protein 56

1.6e-05

37.14

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        M   ++L+E A GYAL     ++EI      +  SV +L +F  +V+L  F PF  +  AL+  N+VSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

O94514 Nucleolar protein 56

1.7e-12

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Query:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG--NDLL
        YLLYESA+GY+LF   G D+I   T+ ++ S+ D+++FGKVV+L  F PF+ A  AL+  N +SEG  ND L
Subjt:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG--NDLL

Q21276 Nucleolar protein 56

2.8e-07

39.39

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Query:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        ++LYE A+GYAL      D+ G   + + ++ +D  +F ++V+LA F PF+    AL+ CNS+SEG
Subjt:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

Q54MT2 Nucleolar protein 56

2.0e-08

36.76

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Query:  STYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        +T++L+E+A+G+ +F   G++ I + T+ ++ S+ D ++F KV K+    PF  A +AL+  NS+SEG
Subjt:  STYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

Q95K50 Nucleolar protein 56

1.6e-05

37.14

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Query:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        M   ++L+E A GYAL     ++EI      +  SV +L +F  +V+L  F PF  +  AL+  N+VSEG
Subjt:  MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

Arabidopsis top hits

e value

%identity

Alignment

AT1G56110.1 homolog of nucleolar protein NOP56

4.5e-24

74.24

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Query:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        Y++YES+SGY LF  HGLDEIGQNTEA+R+SVSDL+RFG+VV+L  FHPFE ALDAL Q N+VSEG
Subjt:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein

1.1e-22

74.24

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Query:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG
        YLL ES SGY LF  HG DEIGQNTEA+RSSVSDL+RFG+VV+L  FHPF+ ALDAL Q N+VSEG
Subjt:  YLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEG

Sequences

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CDS sequence

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ATGACGTCGACGTATCTTCTATATGAATCTGCTTCTGGTTATGCTCTGTTTCATGCCCATGGCCTTGACGAAATTGGGCAGAACACTGAAGCCATTCGGAGCTCGGTCTC
CGACCTCAACCGCTTTGGCAAGGTCGTGAAGCTTGCCGTTTTCCACCCGTTCGAGTTAGCTCTCGATGCACTCAAGCAATGCAACTCAGTGTCTGAAGGAAATGACTTGC
TTGGTTGTTCCATTATGTGTTTGAAGTTAACTGTGGTGTATTTCTGTGTTTGA

mRNA sequence

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Protein sequence

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MTSTYLLYESASGYALFHAHGLDEIGQNTEAIRSSVSDLNRFGKVVKLAVFHPFELALDALKQCNSVSEGNDLLGCSIMCLKLTVVYFCV

Lag0018947 (gene) of Sponge gourd (AG-4) v1 genome