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Lag0018958 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018958
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr5:37023699..37024415
RNA-Seq ExpressionLag0018958
SyntenyLag0018958
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4263564.1 unnamed protein product [Prunus armeniaca]8.9e-3237.93Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +L+V+   CH++YL LP+ +  ++    + +K RVW ++ GW+G+  S +GK+VLIKS+ QAIP Y+M+                               
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  ----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSN
                        FR +  FNQALL KQ WR+   P SL+  + K RYFPH D   A  G   SF W+SLLWGRDLL  G RWRIG+G    IYG  
Subjt:  ----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSN

Query:  WLP
        W+P
Subjt:  WLP

ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]2.7e-3635.92Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +L+V    CH+ YL LP+     +    + +K ++WK I GWK +  S +GK++LIK+++QAIP Y+M+C                              
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS
                         FR++E FNQALLAKQCWR+ R P+SL+  + + RY P     EA++G   SFIWRSL WG++LL +G RWR+G+G+S  +Y  
Subjt:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS

Query:  NWLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE
         WLPA  C    S   L L  R+   F S       LL  I WD+
Subjt:  NWLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]1.7e-3535.66Show/hide
Query:  LSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC-------------------------------
        L+V    CH+ YL LP+     +    + +K ++WK I GWK +  S +GK++LIK+++QAIP Y+M+C                               
Subjt:  LSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC-------------------------------

Query:  ----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSN
                        FR++E FNQALLAKQCWR+ R P+SL+  + + RY P     EA++G   SFIW SL WG++LL +G RWR+G+G+S  +Y   
Subjt:  ----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSN

Query:  WLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE
        WLPA  C    S   L L  R+   F S       LL  I WD+
Subjt:  WLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]1.0e-3534.41Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +L+V    CH++YL LP+     +    + +K ++WK I GWK +  S +GK++L+K+++QAIP Y+M+C                              
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS
                         FR++E FNQALLAKQCWR+ R P+SL+  + + RY P     EA++G   SFIWRSL WG++LL +G RWR+GNG+S  +Y  
Subjt:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS

Query:  NWLPAAPCSAFSLLLHWRLLVEFVSC------------LLHQIHWDE
         WLPA   S F ++   +L +  + C            LL  I WD+
Subjt:  NWLPAAPCSAFSLLLHWRLLVEFVSC------------LLHQIHWDE

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]6.6e-4345.41Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +LSV+   C  QYL LP+FMP N+     +IK RVWK +QGWK + FS  GK+VLIK++ QAIPCYTM+C                              
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS
                         FR++ELFN+ALLAKQCWR+   P S+L  VLK RYF      EA +    S+IWRS+LWGRDLL +G RWRIGNG S  IYG 
Subjt:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS

Query:  NWLPAAP
        NW+P  P
Subjt:  NWLPAAP

TrEMBL top hitse value%identityAlignment
A0A251NPF0 Reverse transcriptase domain-containing protein1.3e-3635.92Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +L+V    CH+ YL LP+     +    + +K ++WK I GWK +  S +GK++LIK+++QAIP Y+M+C                              
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS
                         FR++E FNQALLAKQCWR+ R P+SL+  + + RY P     EA++G   SFIWRSL WG++LL +G RWR+G+G+S  +Y  
Subjt:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS

Query:  NWLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE
         WLPA  C    S   L L  R+   F S       LL  I WD+
Subjt:  NWLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE

A0A5E4FZN9 PREDICTED: retrotransposon4.9e-3634.41Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +L+V    CH++YL LP+     +    + +K ++WK I GWK +  S +GK++L+K+++QAIP Y+M+C                              
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS
                         FR++E FNQALLAKQCWR+ R P+SL+  + + RY P     EA++G   SFIWRSL WG++LL +G RWR+GNG+S  +Y  
Subjt:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS

Query:  NWLPAAPCSAFSLLLHWRLLVEFVSC------------LLHQIHWDE
         WLPA   S F ++   +L +  + C            LL  I WD+
Subjt:  NWLPAAPCSAFSLLLHWRLLVEFVSC------------LLHQIHWDE

A0A6J1DAR4 uncharacterized protein LOC1110189543.2e-4345.41Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +LSV+   C  QYL LP+FMP N+     +IK RVWK +QGWK + FS  GK+VLIK++ QAIPCYTM+C                              
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS
                         FR++ELFN+ALLAKQCWR+   P S+L  VLK RYF      EA +    S+IWRS+LWGRDLL +G RWRIGNG S  IYG 
Subjt:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS

Query:  NWLPAAP
        NW+P  P
Subjt:  NWLPAAP

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)1.3e-3635.92Show/hide
Query:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------
        +L+V    CH+ YL LP+     +    + +K ++WK I GWK +  S +GK++LIK+++QAIP Y+M+C                              
Subjt:  MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC------------------------------

Query:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS
                         FR++E FNQALLAKQCWR+ R P+SL+  + + RY P     EA++G   SFIWRSL WG++LL +G RWR+G+G+S  +Y  
Subjt:  -----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGS

Query:  NWLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE
         WLPA  C    S   L L  R+   F S       LL  I WD+
Subjt:  NWLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE

M5WJW2 Reverse transcriptase domain-containing protein8.4e-3635.66Show/hide
Query:  LSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC-------------------------------
        L+V    CH+ YL LP+     +    + +K ++WK I GWK +  S +GK++LIK+++QAIP Y+M+C                               
Subjt:  LSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNC-------------------------------

Query:  ----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSN
                        FR++E FNQALLAKQCWR+ R P+SL+  + + RY P     EA++G   SFIW SL WG++LL +G RWR+G+G+S  +Y   
Subjt:  ----------------FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSN

Query:  WLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE
        WLPA  C    S   L L  R+   F S       LL  I WD+
Subjt:  WLPAAPC----SAFSLLLHWRLLVEFVSC------LLHQIHWDE

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003108.4e-1745.35Show/hide
Query:  FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSNWL
        FR++  FNQALLAKQ +R+   P +LL  +L+ RYFPH  + E  +G R S+ WRS++ GR+LL RG    IG+G+ T ++   W+
Subjt:  FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSNWL

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein3.3e-1643.01Show/hide
Query:  FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSNWLPAAPCSA
        F+++E FN ALL KQ WR+   P+SL+  V K RYF   D   A LG R SF+W+S+   +++L +G R  +GNG    I+   WL + P SA
Subjt:  FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSNWLPAAPCSA

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.0e-1845.35Show/hide
Query:  FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSNWL
        FR++  FNQALLAKQ +R+   P +LL  +L+ RYFPH  + E  +G R S+ WRS++ GR+LL RG    IG+G+ T ++   W+
Subjt:  FRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFDLFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSNWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCAGTTTCGCGTAGTCTTTGCCATCAACAGTATCTTAGTCTCCCTTCCTTTATGCCCTGGAACCAGTCAGGTACATTGAAATTCATTAAGGGTCGTGTTTGGAA
GCAGATTCAGGGGTGGAAGGGAAGGTTCTTCTCCACTAGTGGTAAGAAAGTGCTCATTAAATCTATTGTACAGGCAATTCCATGTTACACGATGAACTGTTTCAGAAATA
TGGAGTTGTTTAATCAAGCTCTTTTGGCAAAGCAGTGTTGGCGTGTTTTTCGGGATCCCAAGTCTCTTTTATTCTATGTTCTCAAGCGGAGATACTTCCCTCATTTCGAT
TTGTTTGAGGCTGACTTGGGACAACGATCGTCTTTTATCTGGCGAAGTTTATTATGGGGTCGTGACCTATTGGGACGGGGGTGTCGTTGGCGGATTGGTAATGGGTTGTC
CACTCCAATCTATGGATCTAATTGGTTGCCTGCTGCCCCTTGCTCCGCATTCAGTCTGCTCCTACATTGGCGCCTTCTAGTCGAGTTTGTGAGTTGTTTACTGCATCAGA
TCCATTGGGATGAGGGAAAGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCAGTTTCGCGTAGTCTTTGCCATCAACAGTATCTTAGTCTCCCTTCCTTTATGCCCTGGAACCAGTCAGGTACATTGAAATTCATTAAGGGTCGTGTTTGGAA
GCAGATTCAGGGGTGGAAGGGAAGGTTCTTCTCCACTAGTGGTAAGAAAGTGCTCATTAAATCTATTGTACAGGCAATTCCATGTTACACGATGAACTGTTTCAGAAATA
TGGAGTTGTTTAATCAAGCTCTTTTGGCAAAGCAGTGTTGGCGTGTTTTTCGGGATCCCAAGTCTCTTTTATTCTATGTTCTCAAGCGGAGATACTTCCCTCATTTCGAT
TTGTTTGAGGCTGACTTGGGACAACGATCGTCTTTTATCTGGCGAAGTTTATTATGGGGTCGTGACCTATTGGGACGGGGGTGTCGTTGGCGGATTGGTAATGGGTTGTC
CACTCCAATCTATGGATCTAATTGGTTGCCTGCTGCCCCTTGCTCCGCATTCAGTCTGCTCCTACATTGGCGCCTTCTAGTCGAGTTTGTGAGTTGTTTACTGCATCAGA
TCCATTGGGATGAGGGAAAGATTTGA
Protein sequenceShow/hide protein sequence
MLSVSRSLCHQQYLSLPSFMPWNQSGTLKFIKGRVWKQIQGWKGRFFSTSGKKVLIKSIVQAIPCYTMNCFRNMELFNQALLAKQCWRVFRDPKSLLFYVLKRRYFPHFD
LFEADLGQRSSFIWRSLLWGRDLLGRGCRWRIGNGLSTPIYGSNWLPAAPCSAFSLLLHWRLLVEFVSCLLHQIHWDEGKI