; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018980 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018980
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:37311793..37317163
RNA-Seq ExpressionLag0018980
SyntenyLag0018980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1158.44Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.7e-1158.44Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]3.7e-1457.32Show/hide
Query:  MFDVHLHSTFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGS
        M +++LH  FSF K K    KK+R STS FDRLK+T DQ +R+M +L++K F E N D K+HS +PSRMKRK SV INTEG+
Subjt:  MFDVHLHSTFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGS

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-1157.14Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+ +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-1157.14Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+ +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein8.3e-1258.44Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7UC34 Uncharacterized protein1.8e-1457.32Show/hide
Query:  MFDVHLHSTFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGS
        M +++LH  FSF K K    KK+R STS FDRLK+T DQ +R+M +L++K F E N D K+HS +PSRMKRK SV INTEG+
Subjt:  MFDVHLHSTFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGS

A0A5A7UI09 Retrotransposon gag protein1.9e-1157.14Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+ +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5D3BBF9 Gag protease polyprotein8.3e-1258.44Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5D3CCI8 Retrotransposon gag protein1.9e-1157.14Show/hide
Query:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV
        T +F +      KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+ +PSRMKRK SV INTEGSL V
Subjt:  TFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAA
CGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTACCTTCCTCCAAG
TTCGAAGGTTTTCATGCGCTTTGTTGCAGTTCCTTCTCTCCAAACTCGAAGGTGTTCTCACGCGCGCCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCTCAAGTT
GCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCGAAGGTGTTCTCGCGCACTTTGCTGCCGTTCCTTCCT
CTCAAATTCGAAGGTTCTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCCAAATTTGAAGGTTCTCACGACGCTCCACTGCAGTTCCTTCTCTCTCCAAATTCGAAGGTTC
TCACGCGCTCCGCTGCAGTTCCTTCGCTTCCGCTGCAGTTCATTCTCTCTCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCGCTTTCGCTGCAATTCCTT
CTCTCCGAGTTCGAAGGTTCTCACGACGTTTCGTTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGACGCTCCGCTATAGTTCCTTCTCTCCAAATTTGAAGGTGT
TCTCACGCGCGCCGCTGCAGTTCCATCTCTCCAAGTTCGAAGGTGTTCTCGCGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCTCACGCGCTTCGTTAC
AGTTCCTTCTCTCCAAGTATGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGT
AGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCTGAAGGTGCTCACGTGCTTCGGTAAAGTTCCTTCCTCCCAAGTTCGAAGTTTCTTCTCCCTAAGTTCGA
AGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAAGTTTCAAAGGCCCTCACGCG
CTGCGCTTCGTTGCAGTTCCTTCTTCCAAGTTCGAAGGTTCTCATGCGTTTCGATGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTGCCTC
CAAGTTTGAAGGTTCCCTCACGCGTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTT
CTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGTTTGAAGTTCCCTCACGCGCTG
CTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCT
TCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGT
TCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGAGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCTGC
TGCGCTTCATCTTCAAATGTTGGCAGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGAAGGCGAGTC
GGGTCTGATGACCACCCCTGCAGGTTACTCAAATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAG
ATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGCAAATCTGGTGACTACCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCA
GGAGTGCATGAAGGCGAATCTGGTGACTACCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCC
CTGCAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGA
AGATCAACAAGCCAACCGATCGAACAGATCATCAAGCTAACCGACCGATCAAGAAGATCAACAAGCAGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCA
ACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGGCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGA
TCATCCAAGAGATCAACAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAA
CGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTACCTTCCTCCAAG
TTCGAAGGTTTTCATGCGCTTTGTTGCAGTTCCTTCTCTCCAAACTCGAAGGTGTTCTCACGCGCGCCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCTCAAGTT
GCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCGAAGGTGTTCTCGCGCACTTTGCTGCCGTTCCTTCCT
CTCAAATTCGAAGGTTCTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCCAAATTTGAAGGTTCTCACGACGCTCCACTGCAGTTCCTTCTCTCTCCAAATTCGAAGGTTC
TCACGCGCTCCGCTGCAGTTCCTTCGCTTCCGCTGCAGTTCATTCTCTCTCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCGCTTTCGCTGCAATTCCTT
CTCTCCGAGTTCGAAGGTTCTCACGACGTTTCGTTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGACGCTCCGCTATAGTTCCTTCTCTCCAAATTTGAAGGTGT
TCTCACGCGCGCCGCTGCAGTTCCATCTCTCCAAGTTCGAAGGTGTTCTCGCGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCTCACGCGCTTCGTTAC
AGTTCCTTCTCTCCAAGTATGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGT
AGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCTGAAGGTGCTCACGTGCTTCGGTAAAGTTCCTTCCTCCCAAGTTCGAAGTTTCTTCTCCCTAAGTTCGA
AGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAAGTTTCAAAGGCCCTCACGCG
CTGCGCTTCGTTGCAGTTCCTTCTTCCAAGTTCGAAGGTTCTCATGCGTTTCGATGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTGCCTC
CAAGTTTGAAGGTTCCCTCACGCGTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTT
CTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGTTTGAAGTTCCCTCACGCGCTG
CTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCT
TCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGT
TCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGAGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCTGC
TGCGCTTCATCTTCAAATGTTGGCAGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGAAGGCGAGTC
GGGTCTGATGACCACCCCTGCAGGTTACTCAAATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAG
ATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGCAAATCTGGTGACTACCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCA
GGAGTGCATGAAGGCGAATCTGGTGACTACCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCC
CTGCAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGA
AGATCAACAAGCCAACCGATCGAACAGATCATCAAGCTAACCGACCGATCAAGAAGATCAACAAGCAGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCA
ACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGGCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGA
TCATCCAAGAGATCAACAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGA
Protein sequenceShow/hide protein sequence
MFDVHLHSTFSFPKAKCLHIKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVPTLRCCAASFSKFEGSDAALLPSSK
FEGFHALCCSSFSPNSKVFSRAPLQFLLSKFEGSLKLLRCSSFLQVRRFSCALLQFLLSKFEGVLAHFAAVPSSQIRRFSHALRCSSFLPNLKVLTTLHCSSFSLQIRRF
SRAPLQFLRFRCSSFSLQIRRFSRAPLQFLRFRCNSFSPSSKVLTTFRCSSFLPNSKVLTTLRYSSFSPNLKVFSRAPLQFHLSKFEGVLARFAAVPSSQIRRFSHALRY
SSFSPSMKVLSSKSKVLTLLHCSSFLQVRRFSRCFVVVPSLQVRRFSPPSLKVLTCFGKVPSSQVRSFFSLSSKVLTRFAAVPSSLSSKVLTRFAAVPSPKFESFKGPHA
LRFVAVPSSKFEGSHAFRCYLPPSSKVLSRAAAVPASKFEGSLTRSLAPSPSSKALLSAATSPSSKALLSTAPSPSSKALLSTAPSPSSKALLSVATFLQVRSLKFPHAL
LQFLPPSLKVPSRASLAPSPSSKALLSVATSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAEVDVLVPLHLQMLVVDGVC
CASSSNVGRNYSHQSDWSRQVVKSLQLNLMTTVEGESGLMTTPAGYSNHPIKWGLGLAGVHEANLVTTPAGYSDHPIKWGLGLAGVHRCKSGDYPAGYSDHPIKWGLGLA
GVHEGESGDYPAGYSDHPIKWGLGLAGVHEGESGDYPCRLKTPSRFGRLQAPRDQQANRPIKKINKSAGRSSKKINKPTDRTDHQANRPIKKINKQIQEINKPTDRSRRS
TSQQADHPEDQQVSRPIIQEINKATDRSRRSTSQQADHPRDQQANRPIQEIINLAS