CuGenDBv2

Gene ID	Lag0018984
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	ATP-dependent RNA helicase DEAH12, chloroplastic-like
Genome location	chr5:37363522..37364171
RNA-Seq Expression	Lag0018984
Synteny	Lag0018984
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600671.1 ATP-dependent RNA helicase DEAH12, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-57

67.8

Show/hide

Query:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF
        SSSS  FRPPDSS  CNRPS LQYLPRSPN  SRP FPVKFHN SGQRT P  A  +                         PDNFIVPQ GPV AFLFF
Subjt:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF

Query:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        KQWV+ALEAMV FWELRLDG HDFTPILKPR  LPSD DELHDRLR LFA+ IQRLMDGEKV+DW+KKR LV  +ID
Subjt:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

KAG7031310.1 ATP-dependent RNA helicase DEAH12, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-57

67.8

Show/hide

Query:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF
        SSSS  FRPPDSS  CNRPS LQYLPRSPN  SRP FPVKFHN SGQRT P  A  +                         PDNFIVPQ GPV AFLFF
Subjt:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF

Query:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        KQWV+ALEAMV FWELRLDG HDFTPILKPR  LPSD DELHDRLR LFA+ IQRLMDGEKV+DW+KKR LV  +ID
Subjt:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

XP_022943236.1 ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita moschata]

2.1e-57

68.36

Show/hide

Query:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF
        SSSS  FRPPDSS  CNRPS LQYLPRSPN  SRP FPVKFHN SGQRT P  A  +                         PDNFIVPQ GPV AFLFF
Subjt:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF

Query:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        KQWV+ALEAMV FWELRLDG HDFTPILKPR  LPSD DELHDRLR LFA+ IQRLMDGEKVQDW+KKR LV  +ID
Subjt:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

XP_022969963.1 ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita maxima]

1.4e-56

67.23

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Query:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF
        SSS+  FRPPDSS  CNRPS LQYLPRSPN  SRP FPVKFHN SGQRT P  A  +                         PDNFIVPQ GPV AFLFF
Subjt:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF

Query:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        KQWV+ALEAMV FWELRLDG HDFTPILKPR  LPSD DELHDRLR LFA+ IQRLMDGEKV+DW+KKR LV  +ID
Subjt:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

XP_023531305.1 ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita pepo subsp. pepo]

4.7e-57

68.33

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Query:  MKSSSSAT-FRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAF
        MKSSSS+T FRPPDSS  CNRPS LQYLPRSPN  SRP FPVKFHN SGQRT P  A  +                         PDNFIVPQ GPV AF
Subjt:  MKSSSSAT-FRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAF

Query:  LFFKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        LFFKQWV+ALEAMV FWELRLDG HDFTPILKPR  LPSD DELHDRLR LFA  IQRLMDGEKV+DW+KKR LV  +ID
Subjt:  LFFKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C1B4 ATP-dependent RNA helicase DEAH12, chloroplastic-like

8.1e-47

58.99

Show/hide

Query:  MKSSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARIL-------------------------PDNFIVPQAGPVAAFLF
        MKSSSS   RPPDSSFRCNRPSNL +LPRSPNA    D P KF   + Q  P  A                            PDNFI+PQAG V+AFLF
Subjt:  MKSSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARIL-------------------------PDNFIVPQAGPVAAFLF

Query:  FKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        FKQWV+ALE+MVG WELRL+GFHDFTPILKPR  LPSD DELH RLR LFA+ I+RLMDG+KV+ W+ K  LV+ +ID
Subjt:  FKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

A0A5A7TQC6 ATP-dependent RNA helicase DEAH12

8.1e-47

58.99

Show/hide

Query:  MKSSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARIL-------------------------PDNFIVPQAGPVAAFLF
        MKSSSS   RPPDSSFRCNRPSNL +LPRSPNA    D P KF   + Q  P  A                            PDNFI+PQAG V+AFLF
Subjt:  MKSSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARIL-------------------------PDNFIVPQAGPVAAFLF

Query:  FKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        FKQWV+ALE+MVG WELRL+GFHDFTPILKPR  LPSD DELH RLR LFA+ I+RLMDG+KV+ W+ K  LV+ +ID
Subjt:  FKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

A0A5D3BD53 ATP-dependent RNA helicase DEAH12

8.1e-47

58.99

Show/hide

Query:  MKSSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARIL-------------------------PDNFIVPQAGPVAAFLF
        MKSSSS   RPPDSSFRCNRPSNL +LPRSPNA    D P KF   + Q  P  A                            PDNFI+PQAG V+AFLF
Subjt:  MKSSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARIL-------------------------PDNFIVPQAGPVAAFLF

Query:  FKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        FKQWV+ALE+MVG WELRL+GFHDFTPILKPR  LPSD DELH RLR LFA+ I+RLMDG+KV+ W+ K  LV+ +ID
Subjt:  FKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

A0A6J1FR66 ATP-dependent RNA helicase DEAH12, chloroplastic-like

1.0e-57

68.36

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Query:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF
        SSSS  FRPPDSS  CNRPS LQYLPRSPN  SRP FPVKFHN SGQRT P  A  +                         PDNFIVPQ GPV AFLFF
Subjt:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF

Query:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        KQWV+ALEAMV FWELRLDG HDFTPILKPR  LPSD DELHDRLR LFA+ IQRLMDGEKVQDW+KKR LV  +ID
Subjt:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

A0A6J1I2G6 ATP-dependent RNA helicase DEAH12, chloroplastic-like

6.6e-57

67.23

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Query:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF
        SSS+  FRPPDSS  CNRPS LQYLPRSPN  SRP FPVKFHN SGQRT P  A  +                         PDNFIVPQ GPV AFLFF
Subjt:  SSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRT-PQTARIL-------------------------PDNFIVPQAGPVAAFLFF

Query:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID
        KQWV+ALEAMV FWELRLDG HDFTPILKPR  LPSD DELHDRLR LFA+ IQRLMDGEKV+DW+KKR LV  +ID
Subjt:  KQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEID

SwissProt top hits

e value

%identity

Alignment

F4KGU4 ATP-dependent RNA helicase DEAH12, chloroplastic

6.2e-12

36.23

Show/hide

Query:  SATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARILPDNFIVPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILK
        S+ + PP +  R N    L + P + N+ ++  F  K      +       I  ++  VPQ G +A    F+QWV+A  A+V  W+ RL G H+F P L 
Subjt:  SATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARILPDNFIVPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILK

Query:  PRFKLPSDEDELHDRLRKLFADCIQRLMD-GEKVQDWR
        P   +PSD +EL DRLR LF+  I  LM+ GE V+  R
Subjt:  PRFKLPSDEDELHDRLRKLFADCIQRLMD-GEKVQDWR

P0CE10 ATP-dependent RNA helicase DEAH11, chloroplastic

2.5e-13

52.11

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Query:  VPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMD
        VPQ G +AA   F+QWV+A  A+V  W+ RL G HDF P L P   +PSD DEL DRLR LF+  +  LM+
Subjt:  VPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMD

Arabidopsis top hits

e value

%identity

Alignment

AT4G01020.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related

1.8e-14

52.11

Show/hide

Query:  VPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMD
        VPQ G +AA   F+QWV+A  A+V  W+ RL G HDF P L P   +PSD DEL DRLR LF+  +  LM+
Subjt:  VPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKLPSDEDELHDRLRKLFADCIQRLMD

AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related

4.4e-13

36.23

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Query:  SATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARILPDNFIVPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILK
        S+ + PP +  R N    L + P + N+ ++  F  K      +       I  ++  VPQ G +A    F+QWV+A  A+V  W+ RL G H+F P L 
Subjt:  SATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARILPDNFIVPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILK

Query:  PRFKLPSDEDELHDRLRKLFADCIQRLMD-GEKVQDWR
        P   +PSD +EL DRLR LF+  I  LM+ GE V+  R
Subjt:  PRFKLPSDEDELHDRLRKLFADCIQRLMD-GEKVQDWR

Sequences

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CDS sequence

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ATGAAATCTTCTTCCTCCGCCACCTTCAGGCCACCGGATTCTTCCTTCAGATGTAATCGACCTTCTAATTTGCAGTACCTGCCGCGTTCTCCGAATGCGCCGTCTAGGCC
CGACTTTCCTGTGAAATTTCATAATTATTCTGGACAACGAACTCCTCAAACCGCGCGAATTTTGCCGGACAATTTTATTGTCCCCCAGGCCGGTCCTGTTGCTGCGTTTT
TGTTCTTTAAGCAGTGGGTTAACGCGCTTGAGGCTATGGTAGGGTTCTGGGAATTGCGCCTCGATGGGTTTCATGATTTCACTCCGATTCTGAAACCTAGGTTCAAGTTG
CCCTCGGATGAGGACGAACTCCATGATCGACTTCGGAAGCTCTTTGCTGACTGTATCCAGCGTCTCATGGATGGCGAAAAGGTGCAAGATTGGCGAAAGAAACGCCACCT
TGTTATGGCTGAGATTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGAATTTCGGATAG

mRNA sequence

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Protein sequence

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MKSSSSATFRPPDSSFRCNRPSNLQYLPRSPNAPSRPDFPVKFHNYSGQRTPQTARILPDNFIVPQAGPVAAFLFFKQWVNALEAMVGFWELRLDGFHDFTPILKPRFKL
PSDEDELHDRLRKLFADCIQRLMDGEKVQDWRKKRHLVMAEIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFG

Lag0018984 (gene) of Sponge gourd (AG-4) v1 genome