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Lag0019016 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019016
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationchr5:37642082..37642603
RNA-Seq ExpressionLag0019016
SyntenyLag0019016
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055821.1 uncharacterized protein E6C27_scaffold181G002160 [Cucumis melo var. makuwa]9.0e-1382Show/hide
Query:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDA
        AFV NRQIL ASL+ANELIDDW+   K GVVLKLDLEKAFD VDWDFLDA
Subjt:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDA

RVW31409.1 LINE-1 reverse transcriptase-like [Vitis vinifera]9.0e-1353.42Show/hide
Query:  KKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLVQYGGNGFMDASRV
        + AFV  RQILDASLIANE+ID W    KKG++ KLD+EKA+D V+W FL  ++   G    GG+G+  ASR+
Subjt:  KKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLVQYGGNGFMDASRV

TYK17996.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1369.64Show/hide
Query:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG
        A V NRQILDASL+A EL+DDW +  +KGV++KL LEKAFD VDWDFLD IL+ KG
Subjt:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG

XP_022132189.1 uncharacterized protein LOC111005109 [Momordica charantia]5.1e-1671.19Show/hide
Query:  KKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG
        ++ AFVA RQILDASLIANE+I+DW+  ++KGVV+KLD+EKAFDKVDWDFLD +L  KG
Subjt:  KKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG

XP_022145825.1 uncharacterized protein LOC111015185 [Momordica charantia]3.9e-1669.35Show/hide
Query:  DKKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLV
        D++ AFVA  QILDASLIANELI++W+  +KKG V+KLD+EKAFDKVDWDFLD +L+ KG V
Subjt:  DKKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLV

TrEMBL top hitse value%identityAlignment
A0A438D7I0 LINE-1 reverse transcriptase-like4.3e-1353.42Show/hide
Query:  KKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLVQYGGNGFMDASRV
        + AFV  RQILDASLIANE+ID W    KKG++ KLD+EKA+D V+W FL  ++   G    GG+G+  ASR+
Subjt:  KKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLVQYGGNGFMDASRV

A0A5A7UQH4 Reverse transcriptase domain-containing protein4.3e-1382Show/hide
Query:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDA
        AFV NRQIL ASL+ANELIDDW+   K GVVLKLDLEKAFD VDWDFLDA
Subjt:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDA

A0A5D3D3Q8 Reverse transcriptase1.5e-1369.64Show/hide
Query:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG
        A V NRQILDASL+A EL+DDW +  +KGV++KL LEKAFD VDWDFLD IL+ KG
Subjt:  AFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG

A0A6J1BSD3 uncharacterized protein LOC1110051092.5e-1671.19Show/hide
Query:  KKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG
        ++ AFVA RQILDASLIANE+I+DW+  ++KGVV+KLD+EKAFDKVDWDFLD +L  KG
Subjt:  KKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKG

A0A6J1CVL8 uncharacterized protein LOC1110151851.9e-1669.35Show/hide
Query:  DKKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLV
        D++ AFVA  QILDASLIANELI++W+  +KKG V+KLD+EKAFDKVDWDFLD +L+ KG V
Subjt:  DKKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases8.1e-0439.29Show/hide
Query:  AFVANRQILDASLIANELIDDWNYSRKKGV----VLKLDLEKAFDKVDWDFLDAIL
        +F+  R   D  +   E +   +  RKKGV    +LKLDLEKA+D++ WD+L+  L
Subjt:  AFVANRQILDASLIANELIDDWNYSRKKGV----VLKLDLEKAFDKVDWDFLDAIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGTTCTTTAGCAAACCTAGATAAGAAGAAGGCTTTTGTGGCTAATAGACAAATTCTTGATGCTTCTCTTATTGCAAACGAGTTGATTGATGACTGGAATTATTC
TCGTAAGAAAGGTGTGGTGCTTAAGTTAGATCTCGAAAAAGCTTTTGATAAAGTTGATTGGGATTTTCTAGATGCAATTCTTCGGGTCAAGGGTTTGGTCCAGTATGGAG
GAAATGGATTCATGGATGCATCTCGAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAAGTTCTTTAGCAAACCTAGATAAGAAGAAGGCTTTTGTGGCTAATAGACAAATTCTTGATGCTTCTCTTATTGCAAACGAGTTGATTGATGACTGGAATTATTC
TCGTAAGAAAGGTGTGGTGCTTAAGTTAGATCTCGAAAAAGCTTTTGATAAAGTTGATTGGGATTTTCTAGATGCAATTCTTCGGGTCAAGGGTTTGGTCCAGTATGGAG
GAAATGGATTCATGGATGCATCTCGAGTGTAA
Protein sequenceShow/hide protein sequence
MRSSLANLDKKKAFVANRQILDASLIANELIDDWNYSRKKGVVLKLDLEKAFDKVDWDFLDAILRVKGLVQYGGNGFMDASRV