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Lag0019017 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019017
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:37645718..37646505
RNA-Seq ExpressionLag0019017
SyntenyLag0019017
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07150.1 TatD related DNase [Prunus dulcis]3.3e-2234.86Show/hide
Query:  EPEFGAAQFRRLDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKW------NLSQHLSAPQL
        E  F   + + L R+TSD+ P  L    + WGP PFRFEN WLK   F+  +  WW ++   GW G+ FM +LK LK+KL+ W      ++ + L   + 
Subjt:  EPEFGAAQFRRLDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKW------NLSQHLSAPQL

Query:  QSLVSQL----KVLNDIEDKDRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFTAEF
        + L+  L    K     E+ +    +    ++WC IS++++  LE  F  +EV +AV   G  KS GPDGF+  F
Subjt:  QSLVSQL----KVLNDIEDKDRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFTAEF

RVW35116.1 hypothetical protein CK203_085887 [Vitis vinifera]8.8e-2338.16Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL+ WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+++A+  +   K+LGPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

RVW38032.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]3.3e-2237.5Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL+ WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+++A+  +   K+ GPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

RVW89836.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]8.8e-2338.16Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL++WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+Y+A+  +   K+ GPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

RVX23043.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]3.3e-2237.5Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL+ WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+++A+  +   K+ GPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

TrEMBL top hitse value%identityAlignment
A0A0A0KMS2 Uncharacterized protein6.6e-2450.51Show/hide
Query:  EFGAAQFRRLDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQL
        +FG+ Q  +LD V  D++P  ++ GD+ WGPCPF+FENSWL   SFR  ++ WW+ N + GWP HG MMKLK LK   + WN ++H  A +L SL+SQL
Subjt:  EFGAAQFRRLDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQL

A0A438DID5 Uncharacterized protein4.3e-2338.16Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL+ WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+++A+  +   K+LGPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

A0A438DRE2 LINE-1 retrotransposable element ORF2 protein1.6e-2237.5Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL+ WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+++A+  +   K+ GPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

A0A438HZE5 LINE-1 retrotransposable element ORF2 protein4.3e-2338.16Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL++WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+Y+A+  +   K+ GPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

A0A438KPB4 LINE-1 retrotransposable element ORF2 protein1.6e-2237.5Show/hide
Query:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK
        L R TSD++P  L      WGP PFRFEN WL+  SF+     WW +    GW GH FM KL+ +K KL+ WN +   S  +L+S+  + L+    +   
Subjt:  LDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQ-LKVLNDIEDK

Query:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT
          G  +    +DW  IS   +  LE+ F+E+E+++A+  +   K+ GPDGFT
Subjt:  DRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGTGAACCTGAATTTGGTGCAGCTCAATTTCGTAGATTGGATAGGGTTACATCGGATAATTACCCTTGTACTCTCTCTTTTGGGGATCTCTCATGGGGCCCATG
CCCCTTTAGGTTTGAGAATTCATGGCTGAAAATTGATTCTTTTCGCGGAATTATGGATAATTGGTGGTCTCAAAACATTATTCAAGGTTGGCCAGGTCATGGTTTTATGA
TGAAGCTCAAAGGCTTGAAAACTAAACTCCAGAAATGGAATTTATCTCAACACTTATCTGCTCCACAACTTCAATCTCTTGTTTCGCAGTTGAAAGTGTTGAATGATATT
GAAGACAAGGATCGTGGCACTAGATTCCTACCAACTAATATCGACTGGTGTACAATCAGTGAATCGCAATCGATTGGATTGGAAGCTGTTTTTTCAGAAGATGAGGTTTA
CCAAGCAGTGAAATCGCTAGGCACGAGTAAATCTCTAGGTCCAGATGGCTTTACAGCTGAGTTCTTAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGTGAACCTGAATTTGGTGCAGCTCAATTTCGTAGATTGGATAGGGTTACATCGGATAATTACCCTTGTACTCTCTCTTTTGGGGATCTCTCATGGGGCCCATG
CCCCTTTAGGTTTGAGAATTCATGGCTGAAAATTGATTCTTTTCGCGGAATTATGGATAATTGGTGGTCTCAAAACATTATTCAAGGTTGGCCAGGTCATGGTTTTATGA
TGAAGCTCAAAGGCTTGAAAACTAAACTCCAGAAATGGAATTTATCTCAACACTTATCTGCTCCACAACTTCAATCTCTTGTTTCGCAGTTGAAAGTGTTGAATGATATT
GAAGACAAGGATCGTGGCACTAGATTCCTACCAACTAATATCGACTGGTGTACAATCAGTGAATCGCAATCGATTGGATTGGAAGCTGTTTTTTCAGAAGATGAGGTTTA
CCAAGCAGTGAAATCGCTAGGCACGAGTAAATCTCTAGGTCCAGATGGCTTTACAGCTGAGTTCTTAAATTAG
Protein sequenceShow/hide protein sequence
MWSEPEFGAAQFRRLDRVTSDNYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGIMDNWWSQNIIQGWPGHGFMMKLKGLKTKLQKWNLSQHLSAPQLQSLVSQLKVLNDI
EDKDRGTRFLPTNIDWCTISESQSIGLEAVFSEDEVYQAVKSLGTSKSLGPDGFTAEFLN