CuGenDBv2

Gene ID	Lag0019042
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Photosystem I assembly protein ycf3
Genome location	chr5:37943364..37948166
RNA-Seq Expression	Lag0019042
Synteny	Lag0019042
Gene Ontology terms	GO:0005840 - ribosome (cellular component) GO:0009536 - plastid (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6735386.1 hypothetical protein POTOM_062012 [Populus tomentosa]

3.2e-14

59.21

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Query:  KMAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        K+  + +   + ETLKY SK RNLLAYSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP   ++   W  ++R
Subjt:  KMAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

QHO07396.1 Photosystem I P700 chlorophyll a apoprotein [Arachis hypogaea]

7.1e-14

79.25

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Query:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTPVKD
        ETLKY SK RNLL YSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP +D
Subjt:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTPVKD

QHO20337.1 Photosystem I assembly protein [Arachis hypogaea]

5.5e-14

70.49

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Query:  MAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP
        M  L    ++ ETLKY SKR+NLL YSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP
Subjt:  MAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP

RYR39855.1 hypothetical protein Ahy_A09g045490 [Arachis hypogaea]

5.5e-14

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Query:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP
        ETLKYDSK RNLL YSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP
Subjt:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP

TKS04885.1 ribosomal protein S4 [Populus alba]

3.2e-14

59.21

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Query:  KMAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        K+  + +   + ETLKY SK RNLLAYSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP   ++   W  ++R
Subjt:  KMAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

TrEMBL top hits

e value

%identity

Alignment

A0A444X2Y5 Uncharacterized protein

1.7e-13

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Query:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP
        ETLKY SK RNLL YSDRGE AIRQGDSKI EAWF+QAA YWK  IALTP
Subjt:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP

A0A445BIP7 Uncharacterized protein

1.3e-13

73.68

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Query:  MVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP
        M  +   ETLKY SK RNLL YSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP
Subjt:  MVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP

A0A445BME8 Uncharacterized protein

2.7e-14

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Query:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP
        ETLKYDSK RNLL YSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP
Subjt:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP

A0A4U5Q996 30S ribosomal protein S4, chloroplastic

1.6e-14

59.21

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Query:  KMAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        K+  + +   + ETLKY SK RNLLAYSDRGE AIRQGDS+I EAWF+QAA YWK AIALTP   ++   W  ++R
Subjt:  KMAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

A0A7J6DR55 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-13

77.36

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Query:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTPVKD
        ETLKY SK RNL AYSDRGE AIRQGDS+I EAWF+QAA YWK A+ALTP +D
Subjt:  ETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTPVKD

SwissProt top hits

e value

%identity

Alignment

A8SEA4 Photosystem I assembly protein Ycf3

3.6e-08

61.7

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Query:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        RGE AIRQGDS+I EAWF+QAA YWK AIALTP   ++   W  ++R
Subjt:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

Q09MH7 Photosystem I assembly protein Ycf3

1.6e-08

81.82

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Query:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP
        RGE A+RQGDS+I EAWFNQAA YWK AIALTP
Subjt:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP

Q0G9W1 Photosystem I assembly protein Ycf3

3.6e-08

61.7

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Query:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        RGE AIRQGDS+I EAWF+QAA YWK AIALTP   ++   W  ++R
Subjt:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

Q49KZ7 Photosystem I assembly protein Ycf3

3.6e-08

61.7

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Query:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        RGE AIRQGDS+I EAWF+QAA YWK AIALTP   ++   W  ++R
Subjt:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

Q4VZH4 Photosystem I assembly protein Ycf3

9.4e-09

63.83

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Query:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        RGE AIRQGDS+I EAWFNQAA YWK AIALTP   ++   W  ++R
Subjt:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

8.2e-08

55.32

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Query:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR
        RGE AI+QGDS++ EAWF QAA YWK AI LTP   ++   W  ++R
Subjt:  RGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTP---VKDCRWRLVSR

Sequences

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CDS sequence

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ATGTTTCCGGCCGCCGGATTCTTCCGCAGATGGCGGCGGAAGATGGCGGAGCTGATGGTGTTCGTTGCAATTCCGGAAACTCTCAAGTACGATTCTAAGAGAAGGAATTT
ACTTGCCTATTCTGATCGAGGAGAACATGCCATTCGACAGGGAGATTCTAAAATTGTGGAGGCTTGGTTCAATCAAGCCGCTGTGTATTGGAAATTAGCTATAGCACTTA
CTCCAGTCAAAGATTGCCGGTGGCGATTGGTCAGCAGAGGTAAGAAGGGGTTAACAGTGGCGGTCGGTTGGCGAAGGTCGATGGCGACCGGTAGTTGGAGGTCAACGACG
GCGATTGGTTGGCAGAGGCTAGTAGTTGGAGGTCGACGGTGGTGGTCGGTTGACGGAGGTCAGCGGTACCTGGTAGACAGAGCTCGACGGTGGCAACAAGTAGTCGGAGG
TCGAAGGGGGGCGGTCGGTCGGCGGAGGGCAGTCAACGGAGGTAGGCGACGGTTGGTCGACAGTGGCTGCAAGTCGGTTGCGACTGGTAGTCGGAGGTCGACGGTGGTGG
CCGATAGTCAGAGGTTGACGGTGGTGGCCGATAGTCAGAGGTTGACGATGAAAATCAGTAGTCGGAGGTCGATAGTGGTGATCGGTCGGTAG

mRNA sequence

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Protein sequence

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MFPAAGFFRRWRRKMAELMVFVAIPETLKYDSKRRNLLAYSDRGEHAIRQGDSKIVEAWFNQAAVYWKLAIALTPVKDCRWRLVSRGKKGLTVAVGWRRSMATGSWRSTT
AIGWQRLVVGGRRWWSVDGGQRYLVDRARRWQQVVGGRRGAVGRRRAVNGGRRRLVDSGCKSVATGSRRSTVVADSQRLTVVADSQRLTMKISSRRSIVVIGR

Lag0019042 (gene) of Sponge gourd (AG-4) v1 genome