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Lag0019060 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019060
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr5:38173263..38173595
RNA-Seq ExpressionLag0019060
SyntenyLag0019060
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053507.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1854.17Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D E+  RN VTRP + +    D+ VEE+LA+R RR  +P   + E+LVKWK LP  EISWE VEDL+    +I +F+ R+LTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-1853.12Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D E+  RN VTRP + +    D+ VEE+LA+R RR  +P   + E+LVKWK LP  E SWE VEDL+    +I +F+ R+LTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-1853.12Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D E+  RN VTRP + +    D+ VEE+LA+R RR  +P   + E+LVKWK LP  E SWE VEDL+    +I +F+ R+LTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

XP_022148918.1 uncharacterized protein LOC111017468 [Momordica charantia]2.2e-2765.62Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D  + TRNE+TRP + + N VD+ VE +LA+RTRR+  PR D++EFLVKWKGLP  EI WEH EDLKT    I EFEQRRLTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

XP_038882325.1 uncharacterized protein LOC120073574 [Benincasa hispida]1.0e-1960.92Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQ
        V  LKPYHPD E+  RN + RPPVTMK+  ++ V ++L KRTRRIG+PR +L EFLVKWK LP  EISWE  +D K AA  IA FEQ
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQ

TrEMBL top hitse value%identityAlignment
A0A5A7UG93 Reverse transcriptase9.2e-1954.17Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D E+  RN VTRP + +    D+ VEE+LA+R RR  +P   + E+LVKWK LP  EISWE VEDL+    +I +F+ R+LTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

A0A5A7UXR6 Reverse transcriptase2.0e-1853.12Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D E+  RN VTRP + +    D+ VEE+LA+R RR  +P   + E+LVKWK LP  E SWE VEDL+    +I +F+ R+LTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

A0A5D3C4R1 Reverse transcriptase2.0e-1853.12Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D E+  RN VTRP + +    D+ VEE+LA+R RR  +P   + E+LVKWK LP  E SWE VEDL+    +I +F+ R+LTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

A0A5D3DBE0 Reverse transcriptase2.0e-1853.12Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D E+  RN VTRP + +    D+ VEE+LA+R RR  +P   + E+LVKWK LP  E SWE VEDL+    +I +F+ R+LTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

A0A6J1D5E5 uncharacterized protein LOC1110174681.1e-2765.62Show/hide
Query:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI
        V NLKPYH D  + TRNE+TRP + + N VD+ VE +LA+RTRR+  PR D++EFLVKWKGLP  EI WEH EDLKT    I EFEQRRLTGTSTI
Subjt:  VGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAAGTGCAAGCTTTATGCCAGTTGAGCTATGCTCTTGTTGGCAACTTGAAACCCTACCACCCCGACCTTGAGAACACTACCCGAAATGAAGTAACACGACCTCC
AGTCACCATGAAGAATGTTGTTGATGAAGTTGTCGAAGAAGTTTTAGCTAAGAGGACTCGTCGCATCGGCAAACCACGATGGGATTTAAAAGAATTCTTGGTAAAGTGGA
AGGGGCTCCCAACTGCAGAAATAAGTTGGGAGCATGTCGAAGACCTGAAGACTGCTGCCCTCCAGATCGCAGAGTTCGAGCAACGTCGGTTGACAGGGACGTCAACCATT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGATCAAAGTGCAAGCTTTATGCCAGTTGAGCTATGCTCTTGTTGGCAACTTGAAACCCTACCACCCCGACCTTGAGAACACTACCCGAAATGAAGTAACACGACCTCC
AGTCACCATGAAGAATGTTGTTGATGAAGTTGTCGAAGAAGTTTTAGCTAAGAGGACTCGTCGCATCGGCAAACCACGATGGGATTTAAAAGAATTCTTGGTAAAGTGGA
AGGGGCTCCCAACTGCAGAAATAAGTTGGGAGCATGTCGAAGACCTGAAGACTGCTGCCCTCCAGATCGCAGAGTTCGAGCAACGTCGGTTGACAGGGACGTCAACCATT
TAA
Protein sequenceShow/hide protein sequence
MIKVQALCQLSYALVGNLKPYHPDLENTTRNEVTRPPVTMKNVVDEVVEEVLAKRTRRIGKPRWDLKEFLVKWKGLPTAEISWEHVEDLKTAALQIAEFEQRRLTGTSTI