; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0019080 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019080
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:38386818..38387351
RNA-Seq ExpressionLag0019080
SyntenyLag0019080
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR42018.1 hypothetical protein CICLE_v10013872mg, partial [Citrus clementina]1.7e-1330.17Show/hide
Query:  VARFGSVLSNCKTVEIESLLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQ----KEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPP
        + RF S L++   +E  ++   +   L  +  EEWVV   +IW  RN+L      +E    +   E V   L+A        + +    PRQ    W+  
Subjt:  VARFGSVLSNCKTVEIESLLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQ----KEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPP

Query:  QERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV
         E W+K+N+D + +S    AG G+++R S G VM ++    L + DV+ VE LA   GLRL +++ + P ++++DS+ V
Subjt:  QERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]4.0e-1837.43Show/hide
Query:  SLLRDVKDELEWERHEEWVVLSWAIWSRRN-WLRQKEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPR-----------QVICRWRPPQERWFKINV
        ++LRD +D L W+  EE VV  W++W+RRN ++  K  V    L  WV  Y+  ++  N       ++V +           Q    W P +E  FK+  
Subjt:  SLLRDVKDELEWERHEEWVVLSWAIWSRRN-WLRQKEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPR-----------QVICRWRPPQERWFKINV

Query:  DVVFQSDQMVAGSG-IVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV
        D  F S    AG G I+IR+ RG V+ SA     HV  VD  E LAAV+GLR+A E  + P +LETDS+R+
Subjt:  DVVFQSDQMVAGSG-IVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]9.2e-1542.24Show/hide
Query:  LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAA
        LVEW   Y+  +REAN         V       W PP +R +KIN D  F +    AG GI+IR  RG VM SA     +++ VDM E + AV+GL+LA+
Subjt:  LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAA

Query:  EVSVGPCVLETDSIRV
        ++ V P +LETDS R+
Subjt:  EVSVGPCVLETDSIRV

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]5.4e-1532.39Show/hide
Query:  WVARFGSVL-SNCKTVEIES--LLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQKEEV-----MGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVIC
        W+ +F   L  N K  ++    +LR+  + L     EE  V+ W +W++RN     +       +G+ LVEW   Y   +REA          V      
Subjt:  WVARFGSVL-SNCKTVEIES--LLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQKEEV-----MGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVIC

Query:  RWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCV
         W+PP E  +KIN D  F +    AG GI+I   RG VM +A     +++ VDM E +AAV+GL+LA+E+ + P +
Subjt:  RWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCV

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]9.8e-1737.25Show/hide
Query:  DELEWERHEEWVVLSWAIWSRRNWLRQKEEVMGLC--LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVI
        D + W+     VVL WAIW+ RN   Q   + G    LV W E YL+ Y+ A       +       +  WRPP     K+NVD  F+ +  VAG G++I
Subjt:  DELEWERHEEWVVLSWAIWSRRNWLRQKEEVMGLC--LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVI

Query:  RESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV
        R+S GLV ++A        DVD VEG A  +G+ LA E       +ETDS+R+
Subjt:  RESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV

TrEMBL top hitse value%identityAlignment
A0A6J1CDQ4 uncharacterized protein LOC1110105331.9e-1837.43Show/hide
Query:  SLLRDVKDELEWERHEEWVVLSWAIWSRRN-WLRQKEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPR-----------QVICRWRPPQERWFKINV
        ++LRD +D L W+  EE VV  W++W+RRN ++  K  V    L  WV  Y+  ++  N       ++V +           Q    W P +E  FK+  
Subjt:  SLLRDVKDELEWERHEEWVVLSWAIWSRRN-WLRQKEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPR-----------QVICRWRPPQERWFKINV

Query:  DVVFQSDQMVAGSG-IVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV
        D  F S    AG G I+IR+ RG V+ SA     HV  VD  E LAAV+GLR+A E  + P +LETDS+R+
Subjt:  DVVFQSDQMVAGSG-IVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV

A0A6J1CIF1 uncharacterized protein LOC1110112374.4e-1542.24Show/hide
Query:  LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAA
        LVEW   Y+  +REAN         V       W PP +R +KIN D  F +    AG GI+IR  RG VM SA     +++ VDM E + AV+GL+LA+
Subjt:  LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAA

Query:  EVSVGPCVLETDSIRV
        ++ V P +LETDS R+
Subjt:  EVSVGPCVLETDSIRV

A0A6J1DAR4 uncharacterized protein LOC1110189542.6e-1532.39Show/hide
Query:  WVARFGSVL-SNCKTVEIES--LLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQKEEV-----MGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVIC
        W+ +F   L  N K  ++    +LR+  + L     EE  V+ W +W++RN     +       +G+ LVEW   Y   +REA          V      
Subjt:  WVARFGSVL-SNCKTVEIES--LLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQKEEV-----MGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVIC

Query:  RWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCV
         W+PP E  +KIN D  F +    AG GI+I   RG VM +A     +++ VDM E +AAV+GL+LA+E+ + P +
Subjt:  RWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCV

A0A6J1DBJ7 uncharacterized protein LOC1110189734.7e-1737.25Show/hide
Query:  DELEWERHEEWVVLSWAIWSRRNWLRQKEEVMGLC--LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVI
        D + W+     VVL WAIW+ RN   Q   + G    LV W E YL+ Y+ A       +       +  WRPP     K+NVD  F+ +  VAG G++I
Subjt:  DELEWERHEEWVVLSWAIWSRRNWLRQKEEVMGLC--LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVI

Query:  RESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV
        R+S GLV ++A        DVD VEG A  +G+ LA E       +ETDS+R+
Subjt:  RESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV

V4S3Q7 Uncharacterized protein (Fragment)8.4e-1430.17Show/hide
Query:  VARFGSVLSNCKTVEIESLLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQ----KEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPP
        + RF S L++   +E  ++   +   L  +  EEWVV   +IW  RN+L      +E    +   E V   L+A        + +    PRQ    W+  
Subjt:  VARFGSVLSNCKTVEIESLLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQ----KEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPP

Query:  QERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV
         E W+K+N+D + +S    AG G+++R S G VM ++    L + DV+ VE LA   GLRL +++ + P ++++DS+ V
Subjt:  QERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-0532.11Show/hide
Query:  EWERHEEWVV-LSWAIWSRRNWL--RQKE----EVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGI
        +WE+  + V  L W +W  RN L  R +E    EV+     +  E  ++   E +C  K    +V R    RWRPP  +W K N D  +  D    G G 
Subjt:  EWERHEEWVV-LSWAIWSRRNWL--RQKE----EVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGI

Query:  VIRESRGLV
        V+R  +G V
Subjt:  VIRESRGLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGTAGCTAGGTTTGGATCTGTGTTGTCGAACTGTAAGACAGTAGAGATTGAGAGCCTCCTTCGAGATGTTAAGGATGAATTGGAGTGGGAAAGACATGAGGAGTG
GGTGGTCTTGTCATGGGCAATCTGGAGTAGACGAAATTGGTTGCGGCAGAAGGAGGAGGTGATGGGTTTGTGTTTGGTGGAGTGGGTAGAGGGGTACTTAAAAGCCTACA
GGGAAGCCAACTGCTGGAGGAAGGAGACGGTGGAGGAGGTGCCAAGGCAGGTTATATGTAGGTGGAGGCCACCGCAGGAGAGATGGTTTAAGATTAATGTGGATGTTGTT
TTTCAGTCAGACCAGATGGTAGCTGGTTCGGGGATAGTGATCCGGGAGTCGAGAGGATTGGTGATGGTGTCTGCGGGTTTTCCTCATTTACATGTTAGGGATGTTGATAT
GGTCGAGGGATTAGCAGCAGTGGATGGATTGAGGTTAGCAGCTGAAGTGAGTGTTGGCCCGTGTGTACTGGAGACAGACTCAATAAGGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGTAGCTAGGTTTGGATCTGTGTTGTCGAACTGTAAGACAGTAGAGATTGAGAGCCTCCTTCGAGATGTTAAGGATGAATTGGAGTGGGAAAGACATGAGGAGTG
GGTGGTCTTGTCATGGGCAATCTGGAGTAGACGAAATTGGTTGCGGCAGAAGGAGGAGGTGATGGGTTTGTGTTTGGTGGAGTGGGTAGAGGGGTACTTAAAAGCCTACA
GGGAAGCCAACTGCTGGAGGAAGGAGACGGTGGAGGAGGTGCCAAGGCAGGTTATATGTAGGTGGAGGCCACCGCAGGAGAGATGGTTTAAGATTAATGTGGATGTTGTT
TTTCAGTCAGACCAGATGGTAGCTGGTTCGGGGATAGTGATCCGGGAGTCGAGAGGATTGGTGATGGTGTCTGCGGGTTTTCCTCATTTACATGTTAGGGATGTTGATAT
GGTCGAGGGATTAGCAGCAGTGGATGGATTGAGGTTAGCAGCTGAAGTGAGTGTTGGCCCGTGTGTACTGGAGACAGACTCAATAAGGGTTTGA
Protein sequenceShow/hide protein sequence
MWVARFGSVLSNCKTVEIESLLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQKEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVV
FQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV