CuGenDBv2

Gene ID	Lag0019081
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr5:38389223..38389863
RNA-Seq Expression	Lag0019081
Synteny	Lag0019081
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAB4262994.1 unnamed protein product [Prunus armeniaca]

9.6e-23

38.89

Show/hide

Query:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MA+FWW+ V++ R I WV                                              R RY+PS+ FLEA VG+  SFIWRSL WGK LL KG
Subjt:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE
        LRWR+ +GE + VY + W+P  +  +I+SA  LP  + V DL T+S QWN  LLK  F   E
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE

ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]

1.9e-23

39.51

Show/hide

Query:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MARFWW+  ++ R IHWV                                              R RY+PS  FLEA VG+  SFIWRSL WGK LL KG
Subjt:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE
        LRWR+ SG  + VY   W+P  +  +I+S   LP  +RV DL T+S QWN  LLK  F   E
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]

2.8e-22

38.27

Show/hide

Query:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MARFWW+  ++ R IHWV                                              R RY+PS  FLEA VG+  SFIW SL WGK LL KG
Subjt:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE
        +RWR+ SG  + VY   W+P  +  +I+S   LP  +RV DL T+S QWN  LLK  F   E
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE

XP_022149385.1 uncharacterized protein LOC111017816 [Momordica charantia]

5.1e-24

43.51

Show/hide

Query:  MARFWWSGVEEDRRIHW--------------VLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAV
        MARFWW    ED RIHW               L+GRY+ +  FL+A VGS  S+IWRSL+ G+ +L+ GLRWR+  G  + +Y SNWIP D +  + S  
Subjt:  MARFWWSGVEEDRRIHW--------------VLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAV

Query:  TLPPDSRVADLLTASRQWNEGLLKQHFSPHE
         LP  S V+ L++AS  WNEG+++  F   E
Subjt:  TLPPDSRVADLLTASRQWNEGLLKQHFSPHE

XP_022159057.1 uncharacterized protein LOC111025497 [Momordica charantia]

1.3e-22

38.36

Show/hide

Query:  MARFWWSGVEEDRRIH---------------------------------------------WVLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MARFWW   + D +IH                                             WVL+ +Y+ + DF+EA+VGSRASFIWRSL+WG  LL  G
Subjt:  MARFWWSGVEEDRRIH---------------------------------------------WVLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFS
        LRWR+ +G  + +Y  NWIP D    + S  +LP DS V D  T S QW+E  L+ HFS
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFS

TrEMBL top hits

e value

%identity

Alignment

A0A251NPF0 Reverse transcriptase domain-containing protein

9.3e-24

39.51

Show/hide

Query:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MARFWW+  ++ R IHWV                                              R RY+PS  FLEA VG+  SFIWRSL WGK LL KG
Subjt:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE
        LRWR+ SG  + VY   W+P  +  +I+S   LP  +RV DL T+S QWN  LLK  F   E
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE

A0A6J1D5K1 uncharacterized protein LOC111017816

2.5e-24

43.51

Show/hide

Query:  MARFWWSGVEEDRRIHW--------------VLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAV
        MARFWW    ED RIHW               L+GRY+ +  FL+A VGS  S+IWRSL+ G+ +L+ GLRWR+  G  + +Y SNWIP D +  + S  
Subjt:  MARFWWSGVEEDRRIHW--------------VLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAV

Query:  TLPPDSRVADLLTASRQWNEGLLKQHFSPHE
         LP  S V+ L++AS  WNEG+++  F   E
Subjt:  TLPPDSRVADLLTASRQWNEGLLKQHFSPHE

A0A6J1DYS7 uncharacterized protein LOC111025497

6.1e-23

38.36

Show/hide

Query:  MARFWWSGVEEDRRIH---------------------------------------------WVLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MARFWW   + D +IH                                             WVL+ +Y+ + DF+EA+VGSRASFIWRSL+WG  LL  G
Subjt:  MARFWWSGVEEDRRIH---------------------------------------------WVLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFS
        LRWR+ +G  + +Y  NWIP D    + S  +LP DS V D  T S QW+E  L+ HFS
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFS

A0A6J5TGK7 CCHC-type domain-containing protein

4.6e-23

38.89

Show/hide

Query:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MA+FWW+ V++ R I WV                                              R RY+PS+ FLEA VG+  SFIWRSL WGK LL KG
Subjt:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE
        LRWR+ +GE + VY + W+P  +  +I+SA  LP  + V DL T+S QWN  LLK  F   E
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)

9.3e-24

39.51

Show/hide

Query:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG
        MARFWW+  ++ R IHWV                                              R RY+PS  FLEA VG+  SFIWRSL WGK LL KG
Subjt:  MARFWWSGVEEDRRIHWV---------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKG

Query:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE
        LRWR+ SG  + VY   W+P  +  +I+S   LP  +RV DL T+S QWN  LLK  F   E
Subjt:  LRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHE

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

6.9e-08

28.33

Show/hide

Query:  MARFWWSGVEEDRRIHWV----------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEK
        M  FWWS  E  R+I WV                                              LR RY+P S  +E +VG+R S+ WRS++ G+ LL +
Subjt:  MARFWWSGVEEDRRIHWV----------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEK

Query:  GLRWRIESGERMHVYRSNWI
        GL   I  G    V+   WI
Subjt:  GLRWRIESGERMHVYRSNWI

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.2e-10

29.27

Show/hide

Query:  VLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDS--------RVADLLTAS-RQWNEGL
        V + RY+  SD L A +GSR SF+W+S+   + +L +G R  + +GE + ++R  W+    +   L    +PP          +V+DL+  S R+W + +
Subjt:  VLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDS--------RVADLLTAS-RQWNEGL

Query:  LKQHFSPHE-FVLGQKRVSARPI
        ++  F   E  ++G+ R   R I
Subjt:  LKQHFSPHE-FVLGQKRVSARPI

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

4.9e-09

28.33

Show/hide

Query:  MARFWWSGVEEDRRIHWV----------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEK
        M  FWWS  E  R+I WV                                              LR RY+P S  +E +VG+R S+ WRS++ G+ LL +
Subjt:  MARFWWSGVEEDRRIHWV----------------------------------------------LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEK

Query:  GLRWRIESGERMHVYRSNWI
        GL   I  G    V+   WI
Subjt:  GLRWRIESGERMHVYRSNWI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAAGGTTTTGGTGGAGTGGGGTGGAGGAAGATCGGAGGATCCATTGGGTTTTGAGGGGGCGGTATTATCCGTCTTCAGATTTTTTGGAGGCTACAGTGGGTTCCCG
AGCATCCTTTATCTGGAGGAGTCTAATGTGGGGGAAGGTACTTTTGGAGAAGGGTCTCAGATGGAGAATAGAGAGCGGTGAGAGGATGCATGTTTACAGATCCAATTGGA
TTCCTTGCGATGCCAGTCGAAGGATTTTATCCGCGGTCACGTTGCCACCAGATTCCCGAGTGGCTGATTTGCTAACGGCATCCAGGCAATGGAATGAGGGTCTGCTAAAG
CAACACTTCAGCCCCCATGAGTTTGTGCTCGGTCAAAAGCGGGTATCGGCTAGGCCAATCGGGTGTCGTAGCTCGAAATCTGTCCTTATCGTCCCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MARFWWSGVEEDRRIHWVLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLK
QHFSPHEFVLGQKRVSARPIGCRSSKSVLIVP

Lag0019081 (gene) of Sponge gourd (AG-4) v1 genome