CuGenDBv2

Gene ID	Lag0019140
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase III subunit RPC5
Genome location	chr5:39050653..39059613
RNA-Seq Expression	Lag0019140
Synteny	Lag0019140
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR006886 - DNA-directed RNA polymerase III subunit Rpc5

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008453719.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo]

4.7e-148

85.49

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        E++TMVD+DPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQKKQ GPSTELKT DEECWIPLKYYGLES
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES

Query:  DLSTRYQRNMVAKKISPIQFSMSP
        DLSTR+ ++MV++ +SP+QFSMSP
Subjt:  DLSTRYQRNMVAKKISPIQFSMSP

XP_008453720.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucumis melo]

4.7e-148

85.49

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        E++TMVD+DPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQKKQ GPSTELKT DEECWIPLKYYGLES
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES

Query:  DLSTRYQRNMVAKKISPIQFSMSP
        DLSTR+ ++MV++ +SP+QFSMSP
Subjt:  DLSTRYQRNMVAKKISPIQFSMSP

XP_022136590.1 DNA-directed RNA polymerase III subunit RPC5 [Momordica charantia]

4.3e-149

88.65

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP
        MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTKPEP+PP SK  PEL EPDA  GEKKEE EEVEVKPKVE SLPNGV KMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP

Query:  EAEDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL
        EAE+ETMVD DPMEED SEDMVVREIDVLFTPSADINSKLYVLQYPLRP WRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYD+KA+ SLQMKKQTL
Subjt:  EAEDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGL
        TSSWQPPLATTYAVGLL GN+LHLNPIHAVVQLRPS EHLNSGGPKRKN VR DPDVK EE  D NSA ASRKQKKQ G STELKTGD+ECWIPLKYYGL
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGL

Query:  ESDLSTRYQRNMVAKKISPIQFSMSP
        ESDLSTRYQR+MVA+K SPIQFSMSP
Subjt:  ESDLSTRYQRNMVAKKISPIQFSMSP

XP_038876785.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida]

7.0e-152

88.27

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLDDLDE SQV SRTSRFAPKASK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDARIGEKKEE EEVE+KPKVEPSLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        E+ETMVD+DPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKPSSGEVEVDLNVDIESNNYD+KAD SLQMKKQTLTS
Subjt:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKN+VRADPDVKSEE  D NSA ASRKQKKQ GPSTELKTGDEECWIPLKYYG ES
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES

Query:  DLSTRYQRNMVAKKISPIQFSMSP
        DLSTR+ R+MVA+  +P+QFSMSP
Subjt:  DLSTRYQRNMVAKKISPIQFSMSP

XP_038876786.1 DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Benincasa hispida]

7.0e-152

88.27

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLDDLDE SQV SRTSRFAPKASK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDARIGEKKEE EEVE+KPKVEPSLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        E+ETMVD+DPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKPSSGEVEVDLNVDIESNNYD+KAD SLQMKKQTLTS
Subjt:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKN+VRADPDVKSEE  D NSA ASRKQKKQ GPSTELKTGDEECWIPLKYYG ES
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES

Query:  DLSTRYQRNMVAKKISPIQFSMSP
        DLSTR+ R+MVA+  +P+QFSMSP
Subjt:  DLSTRYQRNMVAKKISPIQFSMSP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUN5 Uncharacterized protein

4.0e-145

84.26

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQP TK EPQPP+SKPE+ EPDAR+ EKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        E++ MVD+DP+EED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVEVDLNVDIESNNYDNKAD + QMKKQTLTS
Subjt:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNNVRAD DVKSEE  D NSA ASRKQKKQ GPSTE+KT DEECWIPLKYYGLES
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES

Query:  DLSTRYQRNMVAKKISPIQFSMSP
        DLSTR+ ++MV++ +SP+QFSMSP
Subjt:  DLSTRYQRNMVAKKISPIQFSMSP

A0A1S3BWX9 DNA-directed RNA polymerase III subunit RPC5 isoform X2

2.3e-148

85.49

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        E++TMVD+DPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQKKQ GPSTELKT DEECWIPLKYYGLES
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES

Query:  DLSTRYQRNMVAKKISPIQFSMSP
        DLSTR+ ++MV++ +SP+QFSMSP
Subjt:  DLSTRYQRNMVAKKISPIQFSMSP

A0A1S3BX09 DNA-directed RNA polymerase III subunit RPC5 isoform X1

2.3e-148

85.49

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLD LDE SQVPSRTSRFAPK+SK KPKPKS+VVPKPEPQQPPTK EPQPPVSKPE+ EPDA+IGEKKE+ EEVEVKPKVE SLPNGVAKMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS
        E++TMVD+DPMEED SEDMVVREIDVLFTPS D NSKLYVLQYPLRPRWRPYEFEGRC+EVRVKPS+GEVE+DLNVDIESNNYD+KADD+ QMKKQTLTS
Subjt:  EDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTS

Query:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES
        SWQPPLAT+YAVGLL GN+LHLNP+HAVVQLRPSFEHLNSGGPKRKNN+RAD DVKSEE  D NSA ASRKQKKQ GPSTELKT DEECWIPLKYYGLES
Subjt:  SWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLES

Query:  DLSTRYQRNMVAKKISPIQFSMSP
        DLSTR+ ++MV++ +SP+QFSMSP
Subjt:  DLSTRYQRNMVAKKISPIQFSMSP

A0A6J1C4C6 DNA-directed RNA polymerase III subunit RPC5

2.1e-149

88.65

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP
        MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTKPEP+PP SK  PEL EPDA  GEKKEE EEVEVKPKVE SLPNGV KMDVETK 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSK--PELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKP

Query:  EAEDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL
        EAE+ETMVD DPMEED SEDMVVREIDVLFTPSADINSKLYVLQYPLRP WRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYD+KA+ SLQMKKQTL
Subjt:  EAEDETMVDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGL
        TSSWQPPLATTYAVGLL GN+LHLNPIHAVVQLRPS EHLNSGGPKRKN VR DPDVK EE  D NSA ASRKQKKQ G STELKTGD+ECWIPLKYYGL
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGL

Query:  ESDLSTRYQRNMVAKKISPIQFSMSP
        ESDLSTRYQR+MVA+K SPIQFSMSP
Subjt:  ESDLSTRYQRNMVAKKISPIQFSMSP

A0A6J1EMD6 DNA-directed RNA polymerase III subunit RPC5 isoform X1

2.6e-144

85.23

Show/hide

Query:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA
        MDLDDLDEPSQVPSRTSRFAPK SK KPKPKS+VVPKPEPQQPPTK EP+ PVSKPE+AEPDA IGEKKEE EEVEVKPKVE SLPNGV KMDVETK E 
Subjt:  MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEA

Query:  EDETMV-DEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLT
        E+ETMV D+DPMEED SEDMVVREIDVLFTPS DIN+KLYVLQYPLRPRWRPYEFEGRC+EVRVKP++GEVEVDLNVDIESNNYD+KAD +LQMKKQTL 
Subjt:  EDETMV-DEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLT

Query:  SSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLE
        SSWQPP+AT+YAVGLL G++LHLNP+H VVQLRPSFEHLNSGGPKRK NVRADP+VKSEE TD NSA  SRKQKKQ GPSTE KTGDEE WIPLKYYGLE
Subjt:  SSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTD-NSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLE

Query:  SDLSTRYQRNMVAKKISPIQFSMSP
        SDLSTR+ R+MVA+K SP+QFSMSP
Subjt:  SDLSTRYQRNMVAKKISPIQFSMSP

SwissProt top hits

e value

%identity

Alignment

O74883 DNA-directed RNA polymerase III subunit rpc5

3.7e-10

29.52

Show/hide

Query:  AEDETMVDEDPMEEDTSE-DMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPY-EFEGRCE-EVRVKPSSGEVEVDLNVDIESNNYDNKA----DDSLQ
        +ED+ M +     ++T E D VVR   V F+P   + + L + Q+PLRP+ R Y +  G    +VRVKP +G +EVD+ +       ++KA    +    
Subjt:  AEDETMVDEDPMEEDTSE-DMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPY-EFEGRCE-EVRVKPSSGEVEVDLNVDIESNNYDNKA----DDSLQ

Query:  MKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLN--------SGGPKRKNNVRADPDVKSEEPTDNSATASRKQKKQPGPSTE--LK
        ++ QTL+   Q P  T   VGL+   Q H+ P+  + QLRPS +H+N        + GP   ++  + P      P       +++  + P  ST   ++
Subjt:  MKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLN--------SGGPKRKNNVRADPDVKSEEPTDNSATASRKQKKQPGPSTE--LK

Query:  TGDEECWIPL
          +EE W+ L
Subjt:  TGDEECWIPL

Q9CZT4 DNA-directed RNA polymerase III subunit RPC5

6.0e-13

27.16

Show/hide

Query:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL
        +D V++EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +D  + NY                  +     S  M KQT 
Subjt:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADP--DVKSEEPTDN--------SATASRKQKKQPGPSTEL--KTGDE
         SS        YA  L    +LHL P+H ++QLRPSF +L+    K +    A+   D   +E  ++        S   S + +++   S E   K   E
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADP--DVKSEEPTDN--------SATASRKQKKQPGPSTEL--KTGDE

Query:  ECWIPLKYYGLESDLSTRYQRNMVAKKISPIQ
        E W+ L YYG+    S   ++ ++ +  S ++
Subjt:  ECWIPLKYYGLESDLSTRYQRNMVAKKISPIQ

Q9NVU0 DNA-directed RNA polymerase III subunit RPC5

1.2e-13

28.45

Show/hide

Query:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL
        +D VV+EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +D  + NY                  +     S  M KQT 
Subjt:  EDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNY------------------DNKADDSLQMKKQTL

Query:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADP--DVKSEEPTDN--------SATASRKQKKQPGPSTEL--KTGDE
         SS      + YA  L    +LHL P+H ++QLRPSF +L+    K +    A+   D   +E  D+        S   S + +++   S E   K   E
Subjt:  TSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADP--DVKSEEPTDN--------SATASRKQKKQPGPSTEL--KTGDE

Query:  ECWIPLKYYGLESDLSTRYQRNMVAKKISPIQ
        E W+ L YYGL    S   ++ ++    S ++
Subjt:  ECWIPLKYYGLESDLSTRYQRNMVAKKISPIQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G49530.1 SIN-like family protein

8.8e-60

43.92

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Query:  MDLDDLDEPSQVPSRTSRFAP-KASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPE
        MD DD D+P +V ++T RFAP +A K KPKPK        P+    KP   PP S+ E       + + + + +   V  KVE  + NG  KM++++K +
Subjt:  MDLDDLDEPSQVPSRTSRFAP-KASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPE

Query:  AEDETM------------VDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKA
         E E M            + E+  EE+  +D+VVREIDV F PS D N++LYVLQYPLRP WRPYE + RCEEVRV PS+ +VE+DL++D+ S NYD  +
Subjt:  AEDETM------------VDEDPMEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKA

Query:  DDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQKK-QPGPSTELKTGDE
        +  L M KQTL ++W+ P    YAVG+L+G++LHLNP+HAV QLRPS + L+S           D   K EE T+ S   S+KQ K     ST+ K  +E
Subjt:  DDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQLHLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQKK-QPGPSTELKTGDE

Query:  ECWIPLKYYGLESDLSTRYQRNMVAKKISPIQFSMSP
        E W+ LKY+GL+S+  +RY   M+A   S I F+MSP
Subjt:  ECWIPLKYYGLESDLSTRYQRNMVAKKISPIQFSMSP

Sequences

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CDS sequence

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ATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTCGCTCCCAAGGCCTCTAAATTGAAGCCGAAACCCAAATCGGATGTAGTTCCGAA
ACCGGAGCCCCAACAGCCGCCAACGAAGCCGGAACCTCAACCTCCCGTTTCGAAGCCGGAACTTGCAGAGCCGGATGCTCGAATTGGTGAGAAGAAGGAAGAAGCTGAAG
AAGTTGAAGTGAAACCTAAAGTTGAACCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGCCAGAGGCTGAAGACGAGACAATGGTGGATGAGGATCCA
ATGGAAGAGGATACTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCAGCAGATATCAATTCGAAATTATACGTATTGCAATATCCTCTGAGACC
ACGCTGGAGGCCCTACGAATTTGAGGGGCGATGTGAAGAGGTGAGAGTTAAACCTAGCAGTGGAGAAGTTGAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATG
ACAATAAGGCTGATGACAGTTTGCAAATGAAGAAGCAGACTTTGACATCTTCATGGCAACCACCTCTAGCAACTACCTATGCTGTTGGGCTGCTTACGGGTAATCAGCTA
CACCTGAATCCCATACATGCAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAAACAATGTTAGAGCTGATCCAGATGTTAAGTC
AGAAGAGCCTACAGATAACTCTGCAACTGCATCAAGGAAGCAGAAGAAGCAACCAGGACCTTCAACGGAACTTAAAACTGGAGATGAAGAGTGCTGGATTCCACTTAAGT
ACTATGGCCTAGAGAGTGATCTATCAACCAGATATCAGCGAAACATGGTGGCAAAGAAAATTTCCCCTATACAATTTTCAATGAGCCCCTGGAACTGCCAGCAGCTTCTG
AAGTTAGTGGCGGCGGTGGCAAAGACGGCCAGTGACATTGCCGGCGAAGATTGCTGA

mRNA sequence

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Protein sequence

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MDLDDLDEPSQVPSRTSRFAPKASKLKPKPKSDVVPKPEPQQPPTKPEPQPPVSKPELAEPDARIGEKKEEAEEVEVKPKVEPSLPNGVAKMDVETKPEAEDETMVDEDP
MEEDTSEDMVVREIDVLFTPSADINSKLYVLQYPLRPRWRPYEFEGRCEEVRVKPSSGEVEVDLNVDIESNNYDNKADDSLQMKKQTLTSSWQPPLATTYAVGLLTGNQL
HLNPIHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEPTDNSATASRKQKKQPGPSTELKTGDEECWIPLKYYGLESDLSTRYQRNMVAKKISPIQFSMSPWNCQQLL
KLVAAVAKTASDIAGEDC

Lag0019140 (gene) of Sponge gourd (AG-4) v1 genome