; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0019196 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019196
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D2
Genome locationchr5:39753063..39755675
RNA-Seq ExpressionLag0019196
SyntenyLag0019196
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027248 - Small nuclear ribonucleoprotein Sm D2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044802.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa]1.7e-4999.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

KAG6577216.1 U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4999.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

XP_004146504.1 small nuclear ribonucleoprotein Sm D2 [Cucumis sativus]1.7e-4999.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

XP_022983472.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima]3.8e-4998.06Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED +KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

XP_038876979.1 small nuclear ribonucleoprotein Sm D2-like [Benincasa hispida]1.7e-4999.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEEDA KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

TrEMBL top hitse value%identityAlignment
A0A0A0KUK4 Small nuclear ribonucleoprotein Sm D28.2e-5099.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

A0A1S3BTT5 Small nuclear ribonucleoprotein Sm D28.2e-5099.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

A0A5A7TNA0 Small nuclear ribonucleoprotein Sm D28.2e-5099.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

A0A6J1EM19 Small nuclear ribonucleoprotein Sm D28.2e-5099.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

A0A6J1J3W3 Small nuclear ribonucleoprotein Sm D28.2e-5099.03Show/hide
Query:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
        MEED SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR
Subjt:  MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR

Query:  NPK
        NPK
Subjt:  NPK

SwissProt top hitse value%identityAlignment
P62316 Small nuclear ribonucleoprotein Sm D22.6e-4587Show/hide
Query:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

P62317 Small nuclear ribonucleoprotein Sm D22.6e-4587Show/hide
Query:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q18786 Probable small nuclear ribonucleoprotein Sm D23.9e-4181Show/hide
Query:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+ +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Subjt:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D22.6e-4587Show/hide
Query:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D22.0e-4584.47Show/hide
Query:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+ ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Subjt:  EDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Query:  KST
         +T
Subjt:  KST

Arabidopsis top hitse value%identityAlignment
AT2G47640.1 Small nuclear ribonucleoprotein family protein1.8e-4992.38Show/hide
Query:  MEEDAS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIV
        MEED +  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIV
Subjt:  MEEDAS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIV

Query:  LRNPK
        LRNPK
Subjt:  LRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein1.4e-4993.27Show/hide
Query:  MEEDAS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL
        MEED + K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVL
Subjt:  MEEDAS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL

Query:  RNPK
        RNPK
Subjt:  RNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein1.4e-4993.27Show/hide
Query:  MEEDAS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL
        MEED + K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVL
Subjt:  MEEDAS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL

Query:  RNPK
        RNPK
Subjt:  RNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein1.8e-4992.38Show/hide
Query:  MEEDAS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIV
        MEED +  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIV
Subjt:  MEEDAS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIV

Query:  LRNPK
        LRNPK
Subjt:  LRNPK

AT3G62840.2 Small nuclear ribonucleoprotein family protein1.4e-4993.27Show/hide
Query:  MEEDAS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL
        MEED + K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVL
Subjt:  MEEDAS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVL

Query:  RNPK
        RNPK
Subjt:  RNPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGATGCTAGCAAGAATGAGGAAGAGGAATTTAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGTCGCAA
CAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTGCCAAAAACAGGGAAGGGCAAGA
AAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCCAAATCAACTCTTTGCAGTGGCTTA
TCTGGAAGTATTAACAGTTTGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGATGCTAGCAAGAATGAGGAAGAGGAATTTAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGTCGCAA
CAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTGCCAAAAACAGGGAAGGGCAAGA
AAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCCAAATCAACTCTTTGCAGTGGCTTA
TCTGGAAGTATTAACAGTTTGGTTTAA
Protein sequenceShow/hide protein sequence
MEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPKSTLCSGL
SGSINSLV