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Lag0019250 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019250
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationchr5:40217466..40218154
RNA-Seq ExpressionLag0019250
SyntenyLag0019250
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577185.1 hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4978.57Show/hide
Query:  SVSDQKQRRR-------NIAMRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVA
        S+  + QR R       NI MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVA
Subjt:  SVSDQKQRRR-------NIAMRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVA

Query:  SAILATDVFDFLIGLIFHET------AAAGDLAESETVSM
        SAILATD+FDFLIGLIFHET      +AA +L ESET+S+
Subjt:  SAILATDVFDFLIGLIFHET------AAAGDLAESETVSM

XP_004146566.1 nuclear transcription factor Y subunit C-3 [Cucumis sativus]9.6e-5192.31Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  ---AAAGDLAESETVSM
           AA GDL ESET+S+
Subjt:  ---AAAGDLAESETVSM

XP_008452022.1 PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo]1.6e-5093.04Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  AA-AGDLAESETVSM
        AA AGD+ ESE +S+
Subjt:  AA-AGDLAESETVSM

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]1.3e-5090.76Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  -----AAAGDLAESETVSM
             +AAGDLAESET+S+
Subjt:  -----AAAGDLAESETVSM

XP_038877432.1 nuclear transcription factor Y subunit C-1-like [Benincasa hispida]6.2e-5089.26Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  -------AAAGDLAESETVSM
               AA GDLAESE +S+
Subjt:  -------AAAGDLAESETVSM

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein4.7e-5192.31Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  ---AAAGDLAESETVSM
           AA GDL ESET+S+
Subjt:  ---AAAGDLAESETVSM

A0A1S3BSA0 nuclear transcription factor Y subunit C-1-like7.9e-5193.04Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  AA-AGDLAESETVSM
        AA AGD+ ESE +S+
Subjt:  AA-AGDLAESETVSM

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like7.9e-5193.04Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  AA-AGDLAESETVSM
        AA AGD+ ESE +S+
Subjt:  AA-AGDLAESETVSM

A0A6J1C6K6 nuclear transcription factor Y subunit C-1-like2.6e-4986.55Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  AAAGDLAESETVSMRLLQS
         +AG++A+  TVSM +  S
Subjt:  AAAGDLAESETVSMRLLQS

A0A6J1J883 nuclear transcription factor Y subunit C-4-like8.8e-5086.29Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTKRSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  --------AAAGDLAESETVSMRL
                +AAGDL ESET+S+ L
Subjt:  --------AAAGDLAESETVSMRL

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-21.3e-2163.1Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETA
        H LPLARIKKIM K+ EDV+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + DVA+AI  TDVFDFL+ ++  E A
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETA

Q655V5 Nuclear transcription factor Y subunit C-44.8e-2162.03Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        HSLPLARIKKIM K+ EDV+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K D+A+AI  TD++DFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9FMV5 Nuclear transcription factor Y subunit C-41.7e-2163.41Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

Q9SMP0 Nuclear transcription factor Y subunit C-12.8e-2164.56Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9ZVL3 Nuclear transcription factor Y subunit C-31.1e-2059.76Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

Arabidopsis top hitse value%identityAlignment
AT1G08970.4 nuclear factor Y, subunit C97.6e-2259.76Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

AT1G54830.2 nuclear factor Y, subunit C37.6e-2259.76Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

AT3G48590.1 nuclear factor Y, subunit C12.0e-2264.56Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

AT5G63470.1 nuclear factor Y, subunit C41.2e-2263.41Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

AT5G63470.2 nuclear factor Y, subunit C41.2e-2263.41Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCACCCAAAAGGCTGGCCGGCTGCAGCAGCAGCATCTATAAATTCACAGCTCCTTCAAGAAATTTCTCAGTTCAGTTGAATCGAAGAATCTCTGTTTCCGATCA
AAAGCAGAGGCGGAGGAATATTGCGATGAGGCAAGCGGGAGCGTATTCCGGTGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTGGCGAGGATCAAGAAGATCA
TGAAGAAGTCCGGCGAGGACGTGAAGATGATTTCCGGCGAGGCTCCGATCGTGTTCTCGAAGGCGTGCGAACTCTTCATCGAAGAATTGACGAAGAGATCGTGGATGATT
GCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCCACGAAACCGCCGC
CGCCGGCGATCTTGCTGAAAGTGAAACTGTGTCCATGAGGTTGTTGCAGTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACATCACCCAAAAGGCTGGCCGGCTGCAGCAGCAGCATCTATAAATTCACAGCTCCTTCAAGAAATTTCTCAGTTCAGTTGAATCGAAGAATCTCTGTTTCCGATCA
AAAGCAGAGGCGGAGGAATATTGCGATGAGGCAAGCGGGAGCGTATTCCGGTGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTGGCGAGGATCAAGAAGATCA
TGAAGAAGTCCGGCGAGGACGTGAAGATGATTTCCGGCGAGGCTCCGATCGTGTTCTCGAAGGCGTGCGAACTCTTCATCGAAGAATTGACGAAGAGATCGTGGATGATT
GCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCCACGAAACCGCCGC
CGCCGGCGATCTTGCTGAAAGTGAAACTGTGTCCATGAGGTTGTTGCAGTCCTGA
Protein sequenceShow/hide protein sequence
MTSPKRLAGCSSSIYKFTAPSRNFSVQLNRRISVSDQKQRRRNIAMRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMI
AMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETAAAGDLAESETVSMRLLQS