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Lag0019352 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019352
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:41389420..41389911
RNA-Seq ExpressionLag0019352
SyntenyLag0019352
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO69928.1 reverse transcriptase [Corchorus capsularis]4.9e-1534.62Show/hide
Query:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA
        W+ P  +  +K+N DAS +    + G GAV R+  GEVL S    L    +   AEA   +K I  AR+MGF    VE D+L+++K +N  +ED+S +G 
Subjt:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA

Query:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYV-DFVWLEEWPSEVIDVI
            ++     F+ CS     + GN  AH +A+   +   D VW+EE P  ++DV+
Subjt:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYV-DFVWLEEWPSEVIDVI

XP_010687479.1 PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris]5.8e-1635.8Show/hide
Query:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA
        W+ P + D  KLN DA++  +  + G GAVVR+  G+VL + C  +     VD+AEA    +G+Q A + GFR   +E+D+L L   L+    + S  G 
Subjt:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA

Query:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVICREIHL
        +   I+ L+HQ S  S   T +KGN  AH +A +  +     VWLEE P E+  ++  +I L
Subjt:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVICREIHL

XP_021750224.1 uncharacterized protein LOC110715912 [Chenopodium quinoa]2.2e-1531.9Show/hide
Query:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG
        +W+ P D    KLN DA+   +  + G G V+R+  G VL++ C  L   + VDL EA  M + +  A ++GFR F +E D++ L   + + +   ++ G
Subjt:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG

Query:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVICREIHL
         +   I  L+ Q   CS  F  + GN  AH +A+++  + ++  WLEE+PSE+   +C ++ L
Subjt:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVICREIHL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]4.5e-1635.95Show/hide
Query:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG
        +W LP D    K+N DAS       AG G ++RN RG+V+ SA   L N  +VD+AEA   ++G+Q A ++G     +E DS  +  L ++  ED+SE G
Subjt:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG

Query:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEV
         +    +    Q    S  F  ++GN AAH++A  A    +F +W+E+WP E+
Subjt:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEV

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]4.3e-1937.34Show/hide
Query:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG
        +WR P     LK+N+DA+ + E  +AG G ++R+  G V L+A  +L    +VD  E + + +GI  A + GF RF +E DSL +  LL     D SEVG
Subjt:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG

Query:  AMAGVIRELLHQFSP-CSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVI
         +  VI+  L   +   S  FT + GN  AH++A +A T     +W+EEWP E+  V+
Subjt:  AMAGVIRELLHQFSP-CSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVI

TrEMBL top hitse value%identityAlignment
A0A1R3HHY9 Reverse transcriptase2.4e-1534.62Show/hide
Query:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA
        W+ P  +  +K+N DAS +    + G GAV R+  GEVL S    L    +   AEA   +K I  AR+MGF    VE D+L+++K +N  +ED+S +G 
Subjt:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA

Query:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYV-DFVWLEEWPSEVIDVI
            ++     F+ CS     + GN  AH +A+   +   D VW+EE P  ++DV+
Subjt:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYV-DFVWLEEWPSEVIDVI

A0A2I4GJL1 uncharacterized protein LOC1090084472.9e-1328.3Show/hide
Query:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA
        W+ P DV+E+K N DA+   E    G G V+R+  GEVL+  C +  +  +  LAE+W + K ++   ++   +   E D+  ++  +N+ VED S +G 
Subjt:  WRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGA

Query:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTY-VDFVWLEEWPSEVIDVICRE
        +   I++        +  F P+ GN  AH++A  A     + +W+EE P  + + +  +
Subjt:  MAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTY-VDFVWLEEWPSEVIDVICRE

A0A6J1CIF1 uncharacterized protein LOC1110112372.2e-1635.95Show/hide
Query:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG
        +W LP D    K+N DAS       AG G ++RN RG+V+ SA   L N  +VD+AEA   ++G+Q A ++G     +E DS  +  L ++  ED+SE G
Subjt:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG

Query:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEV
         +    +    Q    S  F  ++GN AAH++A  A    +F +W+E+WP E+
Subjt:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEV

A0A6J1DBJ7 uncharacterized protein LOC1110189732.1e-1937.34Show/hide
Query:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG
        +WR P     LK+N+DA+ + E  +AG G ++R+  G V L+A  +L    +VD  E + + +GI  A + GF RF +E DSL +  LL     D SEVG
Subjt:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG

Query:  AMAGVIRELLHQFSP-CSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVI
         +  VI+  L   +   S  FT + GN  AH++A +A T     +W+EEWP E+  V+
Subjt:  AMAGVIRELLHQFSP-CSALFTPKKGNMAAHVMASIAFTYVDF-VWLEEWPSEVIDVI

A0A6P9EUF9 uncharacterized protein LOC1089904622.9e-1331.25Show/hide
Query:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG
        +W  P +   +K N DA++  +    G G V+R+  GE+L++A   +    +   AE   + K ++  R++ F R   E D+ ++V  +N+  ED S  G
Subjt:  MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVG

Query:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIA-FTYVDFVWLEEWPSEVIDVICRE
        ++    ++LL      S  F  ++ NMAAHV+A  A F + D VW+EE P+ +  +IC+E
Subjt:  AMAGVIRELLHQFSPCSALFTPKKGNMAAHVMASIA-FTYVDFVWLEEWPSEVIDVICRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGGCTGCCAGTTGATGTGGATGAACTGAAGTTGAATATTGATGCGTCCGTTAAACCAGAGTGTGGGATTGCTGGGGGAGGGGCGGTTGTGAGGAACATGAGGGG
TGAGGTATTGTTGTCTGCGTGCTTTATTCTCCCCAATTGCTGGAATGTTGATTTAGCAGAGGCTTGGACGATGCTGAAGGGAATACAAACTGCTCGTCAGATGGGTTTCC
GGCGGTTCAGTGTAGAAATCGATTCCCTGATGTTAGTCAAGCTTTTAAATGAGAAGGTGGAGGATGTTTCAGAAGTGGGTGCTATGGCGGGAGTGATTCGTGAACTCCTC
CATCAATTTTCTCCCTGTAGTGCTCTTTTCACACCTAAGAAAGGCAATATGGCTGCTCATGTAATGGCATCTATAGCGTTTACTTATGTCGATTTTGTTTGGCTCGAAGA
GTGGCCTAGTGAGGTCATTGATGTAATCTGTCGTGAGATTCATCTTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGGCTGCCAGTTGATGTGGATGAACTGAAGTTGAATATTGATGCGTCCGTTAAACCAGAGTGTGGGATTGCTGGGGGAGGGGCGGTTGTGAGGAACATGAGGGG
TGAGGTATTGTTGTCTGCGTGCTTTATTCTCCCCAATTGCTGGAATGTTGATTTAGCAGAGGCTTGGACGATGCTGAAGGGAATACAAACTGCTCGTCAGATGGGTTTCC
GGCGGTTCAGTGTAGAAATCGATTCCCTGATGTTAGTCAAGCTTTTAAATGAGAAGGTGGAGGATGTTTCAGAAGTGGGTGCTATGGCGGGAGTGATTCGTGAACTCCTC
CATCAATTTTCTCCCTGTAGTGCTCTTTTCACACCTAAGAAAGGCAATATGGCTGCTCATGTAATGGCATCTATAGCGTTTACTTATGTCGATTTTGTTTGGCTCGAAGA
GTGGCCTAGTGAGGTCATTGATGTAATCTGTCGTGAGATTCATCTTGAATGA
Protein sequenceShow/hide protein sequence
MWRLPVDVDELKLNIDASVKPECGIAGGGAVVRNMRGEVLLSACFILPNCWNVDLAEAWTMLKGIQTARQMGFRRFSVEIDSLMLVKLLNEKVEDVSEVGAMAGVIRELL
HQFSPCSALFTPKKGNMAAHVMASIAFTYVDFVWLEEWPSEVIDVICREIHLE