CuGenDBv2

Gene ID	Lag0019381
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr5:41637390..41637992
RNA-Seq Expression	Lag0019381
Synteny	Lag0019381
Gene Ontology terms	NA
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]

6.2e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]

6.2e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

KAA8523789.1 hypothetical protein F0562_010212 [Nyssa sinensis]

6.2e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]

6.2e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]

6.2e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

TrEMBL top hits

e value

%identity

Alignment

A0A5J4ZHB6 Uncharacterized protein

3.0e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

A0A5J4ZPW7 Retrotran_gag_3 domain-containing protein

3.0e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein

3.0e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

A0A5J5A1U7 Integrase catalytic domain-containing protein

3.0e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

A0A5J5B4Y2 Retrotran_gag_3 domain-containing protein

3.0e-44

53.93

Show/hide

Query:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT
        S + IFLLSNICNL+  RLDSSNY+ W+FQ+ S+L+AHSL   +DG+  CP K++++      ++INP Y +W  QD+AL+TL+NATLS+ A S VIG +
Subjt:  SNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAAFSFVIGCT

Query:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN
        +S+E W AL +RFS+ TRS+I +LKSALH +SKG  +SID Y+ +IK+  D LA+VSV I+DEDIL+Y L  L    N
Subjt:  SSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGTCCTCTTCTTCCGCAGCTTCTGAGGCAATTTTCGGTAGCAACCTCCAGTCCAATACCTTCATCTTCCTACTATCAAATATATGTAATCTGGTTCCAGTGAGGCT
GGACTCTTCAAATTACCTTTTCTGGAGATTCCAGGTTGAGTCAATGCTTAGGGCTCACTCCCTCTTTGACATTGTTGATGGATCGAACAAATGCCCGCCCAAATATCTGC
GCGAGGGTGATAACAATCTTCTCTCTGAAATTAATCCTGTTTATTCTCTCTGGATTGCTCAAGATCGCGCCCTTATCACATTGATTAACGCCACACTTTCGAAAGCCGCC
TTCTCCTTTGTTATCGGTTGTACGTCTTCACAGGAGGTATGGACTGCTCTTGGAAAACGTTTTTCATCACTTACTCGTTCTCACATCCACGAACTCAAGTCAGCGTTGCA
CACTGTATCTAAGGGTTCTACAGAATCTATTGATGATTATCTGATCCGAATTAAAGAGATAGTTGATAAGTTGGCGACAGTCTCTGTCAAGATTGATGATGAAGATATTC
TTCTCTACACACTGAAGTATCTGTCACTCTCGATGAACTTCATGCTCTATTGA

mRNA sequence

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Protein sequence

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MASSSSAASEAIFGSNLQSNTFIFLLSNICNLVPVRLDSSNYLFWRFQVESMLRAHSLFDIVDGSNKCPPKYLREGDNNLLSEINPVYSLWIAQDRALITLINATLSKAA
FSFVIGCTSSQEVWTALGKRFSSLTRSHIHELKSALHTVSKGSTESIDDYLIRIKEIVDKLATVSVKIDDEDILLYTLKYLSLSMNFMLY

Lag0019381 (gene) of Sponge gourd (AG-4) v1 genome