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Lag0019396 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019396
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:41781053..41781715
RNA-Seq ExpressionLag0019396
SyntenyLag0019396
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045000.1 uncharacterized protein E6C27_scaffold74G003100 [Cucumis melo var. makuwa]1.1e-5056.35Show/hide
Query:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF
        M++ + VV+T KTNN+     PS +LG+VY EIC LV  V+IIA +QT+ ER +K + FF CEPP+FGEDTDPL A++WIL LE+IFD I CSDKQKVSF
Subjt:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF

Query:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA
        A LRLKDAAFSW                          RY PRWLK EK++ELCNLEQGD TVAEYDE+F+KL+SL  + I D+A EA LF  G +A
Subjt:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA

TYK16471.1 uncharacterized protein E5676_scaffold21G002740 [Cucumis melo var. makuwa]1.1e-5056.35Show/hide
Query:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF
        M++ + VV+T KTNN+     PS +LG+VY EIC LV  V+IIA +QT+ ER +K + FF CEPP+FGEDTDPL A++WIL LE+IFD I CSDKQKVSF
Subjt:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF

Query:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA
        A LRLKDAAFSW                          RY PRWLK EK++ELCNLEQGD TVAEYDE+F+KL+SL  + I D+A EA LF  G +A
Subjt:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA

XP_004147729.1 uncharacterized protein LOC101209793 [Cucumis sativus]1.2e-4753.81Show/hide
Query:  MSESKAVVTTKKTNN-----NPSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF
        M++ + VV+T KTN+      PS +LG+VY EIC LV  ++IIA +QT+ ER +K + FF CEPP+FGEDTDPL A++WIL LE+IFD I CSD+ KVSF
Subjt:  MSESKAVVTTKKTNN-----NPSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF

Query:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA
        A LRLKDAAFSW                          RY P WLK EK++ELCNLEQGD TVAEYDE+F+KL+SL  + I D+A EA LF  G +A
Subjt:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA

XP_022931358.1 uncharacterized protein LOC111437567 isoform X1 [Cucurbita moschata]5.5e-4555.68Show/hide
Query:  PSGDLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW--------
        P+ +LGDV  EIC+L+  G++++A RQT  E  SK NQFFVC+PP FGEDTDPL AK+W+LGLE+IFDCI CSD+QKVSFA LRLKD+A SW        
Subjt:  PSGDLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW--------

Query:  ------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK
                          RYFP WLK+EK++EL  L QG++TV EYDEEF+ LSSLVS+L  DD+ EA LF  G +
Subjt:  ------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK

XP_023522569.1 uncharacterized protein LOC111786568 [Cucurbita pepo subsp. pepo]2.1e-4455.11Show/hide
Query:  PSGDLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW--------
        P+ +LGDV  EIC+L+  G++++A RQT  E  SK NQFFVC+PP FGEDTDPL AK+W+LGLE+IFDCI CSD+Q VSFA LRLKD+A SW        
Subjt:  PSGDLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW--------

Query:  ------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK
                          RYFP WLK+EK++EL  L QG++TV EYDEEF+ LSSLVS+L  DD+ EA LF  G +
Subjt:  ------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK

TrEMBL top hitse value%identityAlignment
A0A0A0L042 Retrotrans_gag domain-containing protein5.7e-4853.81Show/hide
Query:  MSESKAVVTTKKTNN-----NPSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF
        M++ + VV+T KTN+      PS +LG+VY EIC LV  ++IIA +QT+ ER +K + FF CEPP+FGEDTDPL A++WIL LE+IFD I CSD+ KVSF
Subjt:  MSESKAVVTTKKTNN-----NPSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF

Query:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA
        A LRLKDAAFSW                          RY P WLK EK++ELCNLEQGD TVAEYDE+F+KL+SL  + I D+A EA LF  G +A
Subjt:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA

A0A5A7TP79 Retrotrans_gag domain-containing protein5.5e-5156.35Show/hide
Query:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF
        M++ + VV+T KTNN+     PS +LG+VY EIC LV  V+IIA +QT+ ER +K + FF CEPP+FGEDTDPL A++WIL LE+IFD I CSDKQKVSF
Subjt:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF

Query:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA
        A LRLKDAAFSW                          RY PRWLK EK++ELCNLEQGD TVAEYDE+F+KL+SL  + I D+A EA LF  G +A
Subjt:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA

A0A5D3CX20 Retrotrans_gag domain-containing protein5.5e-5156.35Show/hide
Query:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF
        M++ + VV+T KTNN+     PS +LG+VY EIC LV  V+IIA +QT+ ER +K + FF CEPP+FGEDTDPL A++WIL LE+IFD I CSDKQKVSF
Subjt:  MSESKAVVTTKKTNNN-----PSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSF

Query:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA
        A LRLKDAAFSW                          RY PRWLK EK++ELCNLEQGD TVAEYDE+F+KL+SL  + I D+A EA LF  G +A
Subjt:  AGLRLKDAAFSW--------------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKA

A0A6J1EYB6 uncharacterized protein LOC111437567 isoform X12.6e-4555.68Show/hide
Query:  PSGDLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW--------
        P+ +LGDV  EIC+L+  G++++A RQT  E  SK NQFFVC+PP FGEDTDPL AK+W+LGLE+IFDCI CSD+QKVSFA LRLKD+A SW        
Subjt:  PSGDLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW--------

Query:  ------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK
                          RYFP WLK+EK++EL  L QG++TV EYDEEF+ LSSLVS+L  DD+ EA LF  G +
Subjt:  ------------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK

A0A6J1EZ79 uncharacterized protein LOC111437567 isoform X21.3e-4456.07Show/hide
Query:  DLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW-----------
        +LGDV  EIC+L+  G++++A RQT  E  SK NQFFVC+PP FGEDTDPL AK+W+LGLE+IFDCI CSD+QKVSFA LRLKD+A SW           
Subjt:  DLGDVYYEICTLV-HGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSW-----------

Query:  ---------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK
                       RYFP WLK+EK++EL  L QG++TV EYDEEF+ LSSLVS+L  DD+ EA LF  G +
Subjt:  ---------------RYFPRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAATCGAAAGCAGTTGTCACTACAAAGAAGACTAACAACAACCCATCTGGGGATTTGGGAGATGTTTACTACGAAATTTGCACTTTAGTCCACGGAGTACAGAT
TATTGCAGGTAGACAAACTGAAGCAGAACGGATAAGCAAGATCAATCAGTTTTTTGTCTGTGAACCTCCTACTTTTGGAGAGGATACTGACCCCTTACATGCTAAACAAT
GGATTTTGGGGTTGGAAAGCATCTTTGATTGCATAGACTGTTCAGACAAGCAAAAGGTTTCTTTTGCTGGTTTAAGACTGAAAGATGCTGCATTTTCATGGCGATATTTC
CCACGTTGGTTGAAATATGAAAAGTACAAAGAACTCTGTAACTTGGAACAAGGAGATAAAACCGTAGCTGAGTATGATGAGGAGTTCATGAAGCTGTCTTCTCTTGTTTC
TGATTTGATTAGAGATGATGCTGGGGAAGCTAGCCTGTTCGATAGGGGGTTTAAGGCCAGCAATCAAGACACATCTTTGCTTCGTAGATCAAACGTCGTACCCCGATATG
AGAAGCATGGCGTTAATGGTGGAACGACGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAATCGAAAGCAGTTGTCACTACAAAGAAGACTAACAACAACCCATCTGGGGATTTGGGAGATGTTTACTACGAAATTTGCACTTTAGTCCACGGAGTACAGAT
TATTGCAGGTAGACAAACTGAAGCAGAACGGATAAGCAAGATCAATCAGTTTTTTGTCTGTGAACCTCCTACTTTTGGAGAGGATACTGACCCCTTACATGCTAAACAAT
GGATTTTGGGGTTGGAAAGCATCTTTGATTGCATAGACTGTTCAGACAAGCAAAAGGTTTCTTTTGCTGGTTTAAGACTGAAAGATGCTGCATTTTCATGGCGATATTTC
CCACGTTGGTTGAAATATGAAAAGTACAAAGAACTCTGTAACTTGGAACAAGGAGATAAAACCGTAGCTGAGTATGATGAGGAGTTCATGAAGCTGTCTTCTCTTGTTTC
TGATTTGATTAGAGATGATGCTGGGGAAGCTAGCCTGTTCGATAGGGGGTTTAAGGCCAGCAATCAAGACACATCTTTGCTTCGTAGATCAAACGTCGTACCCCGATATG
AGAAGCATGGCGTTAATGGTGGAACGACGCCTTAG
Protein sequenceShow/hide protein sequence
MSESKAVVTTKKTNNNPSGDLGDVYYEICTLVHGVQIIAGRQTEAERISKINQFFVCEPPTFGEDTDPLHAKQWILGLESIFDCIDCSDKQKVSFAGLRLKDAAFSWRYF
PRWLKYEKYKELCNLEQGDKTVAEYDEEFMKLSSLVSDLIRDDAGEASLFDRGFKASNQDTSLLRRSNVVPRYEKHGVNGGTTP