; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0019431 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019431
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationchr5:42114920..42117168
RNA-Seq ExpressionLag0019431
SyntenyLag0019431
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062951.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa]5.3e-6494.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAAS+MTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTD PYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]2.4e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTD PYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]5.1e-6798.55Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARTSASFKVEASGGKKIKTD PYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]3.1e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTD PYGINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]2.1e-6596.38Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLAR S  FKVEASGGKKIKTD PYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

TrEMBL top hitse value%identityAlignment
A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTD PYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5A7VB86 Photosystem II 10 kDa polypeptide, chloroplastic2.6e-6494.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAAS+MTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTD PYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic1.1e-6495.65Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTD PYGINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic2.5e-6798.55Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARTSASFKVEASGGKKIKTD PYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1JDA0 Photosystem II 10 kDa polypeptide, chloroplastic4.4e-6493.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTD PYGINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic3.6e-5581.29Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S +GLPSLAR+S+SFKV ASG KK+KTD PYGINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic7.4e-5379.29Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTD P+GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic2.2e-5279.43Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTS-ASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK SARGLPSL R S +SF++ ASG KKIKTD P+G+NGSM+LRDG+DASGRKGKG GVY+FVDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTS-ASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic1.4e-5480.58Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S +GLPSL R+S+SFKV ASG KK+KTD PYGINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic2.5e-5682.01Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKPAPF+VEK+A +GLPSLAR+S+SF+V+ASG KK+KTD PYGINGSM+LRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLV+NTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R5.3e-5479.29Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTD P+GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCGGTGATGACCTCTGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTGGCGAGAACTTCCGCCTCCTTCAAGGT
CGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACACTCCCTACGGAATCAACGGTTCCATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGG
GAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATTTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTACGTTGGTGGCACTACC
GGGTTAGCCATTTGGGCAGTGACCTTGGCTGGCCTTCTTGCTGGTGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTGTGAGAACCGTTTAATCCAACATCA
TTTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCCTCGGTGATGACCTCTGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTGGCGAGAACTTCCGCCTCCTTCAAGGT
CGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACACTCCCTACGGAATCAACGGTTCCATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGG
GAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATTTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTACGTTGGTGGCACTACC
GGGTTAGCCATTTGGGCAGTGACCTTGGCTGGCCTTCTTGCTGGTGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTGTGAGAACCGTTTAATCCAACATCA
TTTTGATTGA
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDTPYGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTT
GLAIWAVTLAGLLAGGALLVYNTSALVQCENRLIQHHFD