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Lag0019525 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019525
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationchr5:43027529..43028485
RNA-Seq ExpressionLag0019525
SyntenyLag0019525
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1222011.1 hypothetical protein CJ030_MR2G018503 [Morella rubra]9.8e-4395.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTITALTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

PON57115.1 Transcription elongation factor [Trema orientale]9.8e-4395.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+TALTEPIDIYSEWIDECERVNNLE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

XP_010090451.1 transcription elongation factor 1 homolog isoform X1 [Morus notabilis]3.4e-4397.73Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITALTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

XP_022142747.1 transcription elongation factor 1 homolog [Momordica charantia]3.4e-4397.73Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLE+D A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

XP_038896920.1 transcription elongation factor 1 homolog [Benincasa hispida]7.5e-4390.32Show/hide
Query:  LTPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        ++ Q+MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQE FSTTITAL+E ID+YSEWIDECERVNNLEDDAA
Subjt:  LTPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

TrEMBL top hitse value%identityAlignment
A0A2P5C7Z2 Transcription elongation factor 1 homolog4.8e-4395.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+TALTEPIDIYSEWIDECERVNNLE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

A0A2P5DXC0 Transcription elongation factor 1 homolog4.8e-4395.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+TALTEPIDIYSEWIDECERVNNLE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

A0A6A1W9X5 Transcription elongation factor 1 homolog4.8e-4395.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTITALTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

A0A6J1CNR1 Transcription elongation factor 1 homolog1.6e-4397.73Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLE+D A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

W9R774 Transcription elongation factor 1 homolog1.6e-4397.73Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITALTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.1e-2053.66Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT L+EP+D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVN

P36053 Transcription elongation factor 11.1e-2051.22Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNN
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I +L++P+D+YS+W D  E VN+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNN

P60002 Transcription elongation factor 1 homolog1.1e-2053.66Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT L+EP+D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog1.5e-3884.88Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTITALTE IDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDD

Q8LHP0 Transcription elongation factor 1 homolog2.1e-4393.02Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDD
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+ ALTEPIDIYSEWIDECERVNN+EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein1.1e-3984.88Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTITALTE IDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTGGACAGCCTCACGCCACAAGAAATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTT
CTGCAATCATGGGACCAGTGTGGAATGCCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGCCTTGA
CTGAGCCAATCGACATATATAGCGAATGGATTGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTGGACAGCCTCACGCCACAAGAAATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTT
CTGCAATCATGGGACCAGTGTGGAATGCCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGCCTTGA
CTGAGCCAATCGACATATATAGCGAATGGATTGATGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG
Protein sequenceShow/hide protein sequence
MDVDSLTPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEDDAA