CuGenDBv2

Gene ID	Lag0019542
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	chr5:43168832..43173393
RNA-Seq Expression	Lag0019542
Synteny	Lag0019542
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-155

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Query:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        M  A  SIG LW LRRAAQ+SSF +P A NL  +SFHEARFPSSPSSPLG+SG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI
        NFLTPPVVKESMLA+QKLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQE++GAQVVI
Subjt:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAIELIR
        LKIGEIN TKKGKFAIELI+
Subjt:  LKIGEINSTKKGKFAIELIR

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

7.9e-156

90.88

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Query:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIG LW LRRAAQASSF  P A    NLSFH+ARFP SPSSP GSSG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
Subjt:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP
        LTPPVVKESMLA+QKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ + GAQVV+VP
Subjt:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK
        ELVDFL+SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAIELIR
        IGEINSTKKGKF++ELIR
Subjt:  IGEINSTKKGKFAIELIR

XP_022981895.1 uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]

1.1e-154

89.38

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Query:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        M  A  SIG LW LRRAAQ+SS  +P A NL+ +SFHEARFP+SPSSPLGSSG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI
        NFLTPPVVKESMLA++KLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQE++GAQVVI
Subjt:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAIELIR
        LKIGEIN TKKGKFA+ELIR
Subjt:  LKIGEINSTKKGKFAIELIR

XP_023554595.1 uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo]

1.9e-154

89.06

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Query:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        M  A  SIG LW LRRA  +SSF +P A NL+ +SFHEARFPSSPSSPLG+SG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI
        NFLTPPVVKESMLA+QKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQE++GAQVVI
Subjt:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAIELIR
        LKIGEIN TKKGKFAIELI+
Subjt:  LKIGEINSTKKGKFAIELIR

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

4.0e-160

92.77

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Query:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIG  W LRRAAQ+SSF SP A NLN LSFHEARFPSSPSSPLGSSG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRR VLHTNF
Subjt:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP
        LTPPVVKES+LALQKLADVKAIAQGGYPEAERCRISVGHADEL SDPD++SALSITGNF FHPCSHGDFLG+ILGTGIAREKLGDI+LQE++GAQVV+VP
Subjt:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK
        ELVDFL SSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAIELIR
        IGEINSTKKGKFA+ELIR
Subjt:  IGEINSTKKGKFAIELIR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

3.6e-154

90.31

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Query:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        M   ATSI  LW LRRAAQ SSF  P A NLN L F+EARF   PSSPLG+SG CQL+QAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI
        NFLTPPVVKESMLA+QKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQE+ GAQVVI
Subjt:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAIELIR
        LKIGEINSTKKGKFA+ELIR
Subjt:  LKIGEINSTKKGKFAIELIR

A0A6J1CLT4 uncharacterized protein LOC111012786 isoform X2

2.1e-154

90.57

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Query:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIG LW LRRAAQASSF  P A    NLSFH+ARFP SPSSP GSSG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
Subjt:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP
        LTPPVVKESMLA+QKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ + GAQVV+VP
Subjt:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK
        ELVDFL+SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLI SGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAIELIR
        IGEINSTKKGKF++ELIR
Subjt:  IGEINSTKKGKFAIELIR

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

3.8e-156

90.88

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Query:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIG LW LRRAAQASSF  P A    NLSFH+ARFP SPSSP GSSG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
Subjt:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP
        LTPPVVKESMLA+QKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ + GAQVV+VP
Subjt:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK
        ELVDFL+SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAIELIR
        IGEINSTKKGKF++ELIR
Subjt:  IGEINSTKKGKFAIELIR

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

1.2e-154

89.38

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Query:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        M  A  SIG LW LRRAA++SSF +P A NL  +SFHEARFPSSPSSPLG+SG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI
        NFLTPPVVKESMLA+QKLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF F  C+HGDFLG+ILGTGIAREKLGDI+LQE++GAQVVI
Subjt:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAIELIR
        LKIGEIN TKKGKFAIELI+
Subjt:  LKIGEINSTKKGKFAIELIR

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

5.5e-155

89.38

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Query:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        M  A  SIG LW LRRAAQ+SS  +P A NL+ +SFHEARFP+SPSSPLGSSG CQL+QAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI
        NFLTPPVVKESMLA++KLADVKAIAQGGYPEAERCRISVGHADELTSDPDV+SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQE++GAQVVI
Subjt:  NFLTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAIELIR
        LKIGEIN TKKGKFA+ELIR
Subjt:  LKIGEINSTKKGKFAIELIR

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

6.1e-18

29.65

Show/hide

Query:  TNFLTPPVVKESML--ALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRG
        T+FL P   +E ++  A+   ADV     GGY  AER R ++   + +T +     + A ++     F    H   LG+++G G+ R+K GDI+  E   
Subjt:  TNFLTPPVVKESML--ALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRG

Query:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSV
         Q+++  +  DF+ + L + G   VS  +I L+ L+      +      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+
Subjt:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSV

Query:  SGKGRLKIGEI-NSTKKGKFAIELIR
         G GR  + +I   TKK K+ +   R
Subjt:  SGKGRLKIGEI-NSTKKGKFAIELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

6.5e-116

66.04

Show/hide

Query:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MA TS+   W + R A  S   S                P+S      +   C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+F
Subjt:  MAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP
        LTPP+VKES+  L+K ADVK +AQGGYPEAERCRIS+GH D LTSDPD+++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDIL+QE++GAQV+IVP
Subjt:  LTPPVVKESMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK
        ELVDF+V++L KVGNV V+C++IPL AL+YEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KTGD+VSVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK

Query:  IGEINSTKKGKFAIELIR
        IGEIN TKKGKFA+E+IR
Subjt:  IGEINSTKKGKFAIELIR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACAATGGCCGCAACGAGCATTGGAACTCTGTGGTGTCTAAGAAGAGCAGCCCAAGCTTCGAGTTTCTGCAGTCCCTTTGCCGCTAACCTCAACAACCTCTCCTTCCA
CGAGGCTCGCTTTCCCTCTTCTCCATCTTCTCCTCTTGGCTCCTCAGGAACATGCCAATTACTACAAGCTGTAAAGGGGGACATTGATGTTTTACTTAATGGAGTTGGAG
ATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTTCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAG
TCAATGCTAGCTTTACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAG
TGATCCAGACGTAATTTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGATCAATCCTTGGTACAGGCATTGCTAGGGAAA
AGCTTGGTGATATCTTACTCCAGGAAGATAGGGGAGCTCAAGTAGTCATTGTTCCTGAACTTGTTGACTTCCTTGTATCATCCCTGCGCAAGGTTGGCAATGTCACGGTT
TCTTGTACGAGGATTCCATTGACAGCTCTTGATTACGAACCACCGAAGACCAAGACATTTAAAACCATAGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATT
CAAGATTTCACGGTCTAAACTAGTGGATTTAATCAGTAGCGGTGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATACTAAAGACTGGTGATATTGTTT
CTGTTAGTGGGAAAGGGAGACTAAAGATTGGAGAAATAAATTCTACAAAAAAGGGAAAATTTGCTATTGAGCTTATAAGGCTTGACCAGGACAAGATTAAGTACAACTGT
TCTGGTAAAAACAAAAAAGATATTGCTTCAGTTTAA

mRNA sequence

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Protein sequence

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MTMAATSIGTLWCLRRAAQASSFCSPFAANLNNLSFHEARFPSSPSSPLGSSGTCQLLQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKE
SMLALQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDILLQEDRGAQVVIVPELVDFLVSSLRKVGNVTV
SCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAIELIRLDQDKIKYNC
SGKNKKDIASV

Lag0019542 (gene) of Sponge gourd (AG-4) v1 genome