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Lag0019556 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019556
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr5:43293384..43296672
RNA-Seq ExpressionLag0019556
SyntenyLag0019556
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.4e-2152.08Show/hide
Query:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        S GG++TLIK+ L+S+  Y  S+F+APV  CK IE  +RNFLWK        H VNWAK T+P++ GGLGI  L+  N ALL KWLWR+  ED+ +
Subjt:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.9e-2356.12Show/hide
Query:  QFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        Q S GGR+TLIK  LSS+  Y  SVF+AP   CK IE  +RNFLWKG+   KGSH +NW K T P++ GGLGI  L+  N ALL KWLWR+  E  A+
Subjt:  QFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
KAF5779496.1 putative RNA-directed DNA polymerase [Helianthus annuus]4.2e-2157.3Show/hide
Query:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRF
        S+GGRVTLIK+VL S+  YYFS+++APV+V   +EA  R FLW    + K  HWV W K T P+KLGGLG+ NL+  N+ALL KW WRF
Subjt:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRF
PWA61623.1 RNA-directed DNA polymerase, eukaryota [Artemisia annua]3.2e-2151.04Show/hide
Query:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        S+GGR TLIK+VL S+ +YYFS+++AP +V K +E+L  NFLW G+K E   HWV+W + +TP+  GGLG+  L+  N+ALL KW WRF  E  ++
Subjt:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
TYK15315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-2152.53Show/hide
Query:  LQFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        +Q S GGR+TLIK+ LSS+  Y  SVF+AP  +CK IE  +RNFLWKG+   KGSH +NW K +  ++ GGLGI  L+  N  LL KWLWR+  E  A+
Subjt:  LQFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
TrEMBL top hitse value%identityAlignment
A0A251TW04 Putative RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein9.2e-2256.25Show/hide
Query:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        S+GGR+TLIK+VLSS+  YY S+++APV+V  ++E L RNFLW GT   K +HWV+W   TT +K GGLGI  L   NLALL KW WRF  E  +M
Subjt:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
A0A2U1MK26 RNA-directed DNA polymerase, eukaryota1.6e-2151.04Show/hide
Query:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        S+GGR TLIK+VL S+ +YYFS+++AP +V K +E+L  NFLW G+K E   HWV+W + +TP+  GGLG+  L+  N+ALL KW WRF  E  ++
Subjt:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
A0A5A7VMW0 LINE-1 retrotransposable element ORF2 protein4.6e-2152.53Show/hide
Query:  LQFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        +Q S GGR+TLIK+ LSS+  Y  SVF+AP  +CK IE  +RNFLWKG+   K SH +NW K +  ++ GGLGI  L+  N ALL KWLWR+  E  A+
Subjt:  LQFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
A0A5D3CUY8 LINE-1 retrotransposable element ORF2 protein2.7e-2152.53Show/hide
Query:  LQFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        +Q S GGR+TLIK+ LSS+  Y  SVF+AP  +CK IE  +RNFLWKG+   KGSH +NW K +  ++ GGLGI  L+  N  LL KWLWR+  E  A+
Subjt:  LQFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein2.9e-2356.12Show/hide
Query:  QFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        Q S GGR+TLIK  LSS+  Y  SVF+AP   CK IE  +RNFLWKG+   KGSH +NW K T P++ GGLGI  L+  N ALL KWLWR+  E  A+
Subjt:  QFSLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.4e-1338.54Show/hide
Query:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
        S  GR+TL KAVLSS+  +  S    P  +  +++ L R FLW  T  +K  H V W+K  +P+K GGLG+   ++ N AL+ K  WR  +E  ++
Subjt:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.0e-1031.96Show/hide
Query:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNL---------ALLVKWLWR
        S  GR+ LI +V+ S++ ++ S FR P    K+I+++  +FLW G ++      V W+   TP+  GGLGI +L+  N            L  W+W+
Subjt:  SLGGRVTLIKAVLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNL---------ALLVKWLWR
AT4G29090.1 Ribonuclease H-like superfamily protein5.2e-0935.14Show/hide
Query:  SVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWR
        ++  Y  + F  P  VCK+I ++  +F W+  +  KG HW  W   +  +  GG+G  ++ A NLALL K +WR
Subjt:  SVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTTCCGGATAATTCTCTTCAAAGCTATCAAAGCTGGAAAATTGTTACTAGAAGCAATTTGAAGAAAAATGAACCTGAAGAATTTGGTCTTCTATTTACTAGCTT
GGCATTGGTTTCTTTATCAGCCAAGGAGGATGCTAAAGGCTGGATTTTAGGCTCGTCGGGCAAATTTTCAGTTGATTCTTTATCTGAGCATTTGTCATCCTCCTCTCCTC
TCAATAAAGCACTGTTTTTGGCTATATGGATTCTGCTACATTCAACCTTCAGTGTATTTGTTATGTGTCTGCAATTTTCTCTTGGAGGAAGAGTTACGTTGATCAAAGCA
GTCCTCTCGAGCGTGTCAGCATACTACTTCTCCGTTTTTAGAGCCCCAGTGGAGGTTTGTAAGAAGATAGAGGCCTTGTTTAGAAATTTTCTATGGAAGGGCACCAAGAT
GGAGAAAGGCAGTCACTGGGTGAATTGGGCTAAATTTACTACCCCAAGGAAATTGGGAGGGCTAGGTATCGATAATCTAAGGGCGAAAAACCTTGCTCTTCTTGTTAAAT
GGCTGTGGAGATTTGGCAAAGAAGATACTGCTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTTCCGGATAATTCTCTTCAAAGCTATCAAAGCTGGAAAATTGTTACTAGAAGCAATTTGAAGAAAAATGAACCTGAAGAATTTGGTCTTCTATTTACTAGCTT
GGCATTGGTTTCTTTATCAGCCAAGGAGGATGCTAAAGGCTGGATTTTAGGCTCGTCGGGCAAATTTTCAGTTGATTCTTTATCTGAGCATTTGTCATCCTCCTCTCCTC
TCAATAAAGCACTGTTTTTGGCTATATGGATTCTGCTACATTCAACCTTCAGTGTATTTGTTATGTGTCTGCAATTTTCTCTTGGAGGAAGAGTTACGTTGATCAAAGCA
GTCCTCTCGAGCGTGTCAGCATACTACTTCTCCGTTTTTAGAGCCCCAGTGGAGGTTTGTAAGAAGATAGAGGCCTTGTTTAGAAATTTTCTATGGAAGGGCACCAAGAT
GGAGAAAGGCAGTCACTGGGTGAATTGGGCTAAATTTACTACCCCAAGGAAATTGGGAGGGCTAGGTATCGATAATCTAAGGGCGAAAAACCTTGCTCTTCTTGTTAAAT
GGCTGTGGAGATTTGGCAAAGAAGATACTGCTATGTGA
Protein sequenceShow/hide protein sequence
MNLPDNSLQSYQSWKIVTRSNLKKNEPEEFGLLFTSLALVSLSAKEDAKGWILGSSGKFSVDSLSEHLSSSSPLNKALFLAIWILLHSTFSVFVMCLQFSLGGRVTLIKA
VLSSVSAYYFSVFRAPVEVCKKIEALFRNFLWKGTKMEKGSHWVNWAKFTTPRKLGGLGIDNLRAKNLALLVKWLWRFGKEDTAM