; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0019667 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019667
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:44330485..44335895
RNA-Seq ExpressionLag0019667
SyntenyLag0019667
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3480473.1 unnamed protein product [Digitaria exilis]3.1e-1031.69Show/hide
Query:  GASRTNCEVS--RGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLVVDMGLAPVTLETD
        G S  +C ++  +GV RS   W PPEE W K+ VD ++     +AG G++ ++  G+V+ +A        ++  A+  A  +G+RL V +    V LETD
Subjt:  GASRTNCEVS--RGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLVVDMGLAPVTLETD

Query:  SMRVFSLLQEPAMVDMSEFSVLVSEARKEV-AVEPAKIENGK
         +R+   LQ  A VD SE + ++ EA++ +  +E  ++  G+
Subjt:  SMRVFSLLQEPAMVDMSEFSVLVSEARKEV-AVEPAKIENGK

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]7.4e-1238.36Show/hide
Query:  LVDWAANYLAIFR----GASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMR
        +VDW A+YL +++    G S       RG   S+  W PP   ++KV VDAA+ +    AG  I+++D    V+LSA     HV +  LAE LA  +G+ 
Subjt:  LVDWAANYLAIFR----GASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMR

Query:  LVVDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEARKEVA
        L ++ GL P  +ETDS +VF+LL+     D SE  VL S  R  V+
Subjt:  LVVDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEARKEVA

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.1e-1235.77Show/hide
Query:  RVPSAGLVDWAANYLAIFRGA----SRTNCEVSRGVPRSS--------VKWLPPEERWYKVKVDAAYCEDLSRAGAG-IIVQDEVGRVMLSAAVSHDHVG
        RV    L  W + Y+A F+      +  N +VS+   +SS          W P EE  +K+K DA++      AG G II++D  G+V+ SA    +HV 
Subjt:  RVPSAGLVDWAANYLAIFRGA----SRTNCEVSRGVPRSS--------VKWLPPEERWYKVKVDAAYCEDLSRAGAG-IIVQDEVGRVMLSAAVSHDHVG

Query:  NSDLAEGLAVVDGMRLVVDMGLAPVTLETDSMRVFSL
        + D AE LA V+G+R+ ++ G++P+ LETDS+R+++L
Subjt:  NSDLAEGLAVVDGMRLVVDMGLAPVTLETDSMRVFSL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.0e-1638.41Show/hide
Query:  LVDWAANYLAIFRGASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLVVD
        LV+WA  Y+  FR A+ +N    R    + V WLPP++R YK+  DA++      AG GII++++ G+VM SA    +++ + D+AE +  V+G++L   
Subjt:  LVDWAANYLAIFRGASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLVVD

Query:  MGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEAR
        +G+ PV LETDS R+F+L  +P+  D+SE   +V +A+
Subjt:  MGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEAR

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.5e-1238.69Show/hide
Query:  LVDWAANYLAIFRGASRTNCE--VSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLV
        LV W+ NYL +++ A R++    V    PR ++ W PP     KV VDAA+ ++   AG G+I++D  G V L+A        + D  EG AV +G+ L 
Subjt:  LVDWAANYLAIFRGASRTNCE--VSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLV

Query:  VDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVS
        V+ G     +ETDS+R+F+LL     VD SE  VL S
Subjt:  VDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVS

TrEMBL top hitse value%identityAlignment
A0A5C7HK03 RNase H domain-containing protein5.7e-1032.41Show/hide
Query:  VPSAGLVDWAANYLAIFRGASRTNCEVSRGVPR-SSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDG
        +P   +V WAA+++  FR A+    +V  GV     + W PP+ER YK+  DAA      R G G+I++D VG V+ S++       +  +AE +A+  G
Subjt:  VPSAGLVDWAANYLAIFRGASRTNCEVSRGVPR-SSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDG

Query:  MRLVVDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEARK
        +    D  L P T+  D+  V  L+     V +SE  ++VS  R+
Subjt:  MRLVVDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEARK

A0A6J1C467 uncharacterized protein LOC1110077753.6e-1238.36Show/hide
Query:  LVDWAANYLAIFR----GASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMR
        +VDW A+YL +++    G S       RG   S+  W PP   ++KV VDAA+ +    AG  I+++D    V+LSA     HV +  LAE LA  +G+ 
Subjt:  LVDWAANYLAIFR----GASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMR

Query:  LVVDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEARKEVA
        L ++ GL P  +ETDS +VF+LL+     D SE  VL S  R  V+
Subjt:  LVVDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEARKEVA

A0A6J1CDQ4 uncharacterized protein LOC1110105335.5e-1335.77Show/hide
Query:  RVPSAGLVDWAANYLAIFRGA----SRTNCEVSRGVPRSS--------VKWLPPEERWYKVKVDAAYCEDLSRAGAG-IIVQDEVGRVMLSAAVSHDHVG
        RV    L  W + Y+A F+      +  N +VS+   +SS          W P EE  +K+K DA++      AG G II++D  G+V+ SA    +HV 
Subjt:  RVPSAGLVDWAANYLAIFRGA----SRTNCEVSRGVPRSS--------VKWLPPEERWYKVKVDAAYCEDLSRAGAG-IIVQDEVGRVMLSAAVSHDHVG

Query:  NSDLAEGLAVVDGMRLVVDMGLAPVTLETDSMRVFSL
        + D AE LA V+G+R+ ++ G++P+ LETDS+R+++L
Subjt:  NSDLAEGLAVVDGMRLVVDMGLAPVTLETDSMRVFSL

A0A6J1CIF1 uncharacterized protein LOC1110112374.8e-1738.41Show/hide
Query:  LVDWAANYLAIFRGASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLVVD
        LV+WA  Y+  FR A+ +N    R    + V WLPP++R YK+  DA++      AG GII++++ G+VM SA    +++ + D+AE +  V+G++L   
Subjt:  LVDWAANYLAIFRGASRTNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLVVD

Query:  MGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEAR
        +G+ PV LETDS R+F+L  +P+  D+SE   +V +A+
Subjt:  MGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVSEAR

A0A6J1DBJ7 uncharacterized protein LOC1110189737.2e-1338.69Show/hide
Query:  LVDWAANYLAIFRGASRTNCE--VSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLV
        LV W+ NYL +++ A R++    V    PR ++ W PP     KV VDAA+ ++   AG G+I++D  G V L+A        + D  EG AV +G+ L 
Subjt:  LVDWAANYLAIFRGASRTNCE--VSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLV

Query:  VDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVS
        V+ G     +ETDS+R+F+LL     VD SE  VL S
Subjt:  VDMGLAPVTLETDSMRVFSLLQEPAMVDMSEFSVLVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTATTCTTCTTCATTGACCCAAAACTCAACTTCCCATTTCTTTTCCCCTGAAATCTCCGCTTCATCTTCTCTCAGGCATTTCATCAAACAGTTTGGCTGCAAGCA
ACCGCGCCCATCCCCATGTCGTAACCAATTCGGCTGTTCATGGAATTTTGGGAGATCTCTACATCCGGATGTGACGCTCGAGGATAGGAAGGGGTATATGAATGAACGGA
GATATGAGAGGAATCATGAGGAGATGAAAAAGTTTAGAGGGCGAGTTCCTTCAGCAGGGTTGGTGGATTGGGCGGCGAATTATCTTGCTATTTTTCGAGGGGCCTCTCGG
ACCAATTGTGAGGTGAGTAGAGGGGTGCCTCGGAGTTCAGTAAAATGGCTCCCGCCAGAGGAGAGATGGTATAAGGTGAAAGTGGATGCGGCATATTGTGAGGATTTGTC
TCGGGCAGGTGCTGGAATTATTGTTCAGGATGAGGTTGGGCGAGTCATGTTGTCAGCTGCTGTTAGCCATGATCATGTGGGGAATTCAGATTTGGCAGAGGGGCTAGCGG
TGGTGGACGGGATGAGGCTTGTGGTGGATATGGGTTTAGCTCCGGTAACCCTTGAGACTGACTCTATGCGGGTTTTCTCGCTGTTGCAAGAGCCTGCGATGGTGGATATG
TCTGAGTTCAGTGTGCTAGTTTCTGAGGCTCGAAAGGAGGTGGCGGTCGAGCCAGCGAAGATCGAGAATGGAAAATGGACCAGAGAACCATCTAAGCTGGAAGGTTTAGT
GTCTTTTGGGGGCTTTGTTTGTTTTAGATTGAAAGGGTGGGCACTTGCATGTTTAGTGGGCTTTATATTGATGCTTGATGCACCTGAGCATCAGTCCCATGTGCTTGGCT
TGTGTAGGGGCTCCCTTAGTTGTCTTGAATGGCTAGGGCGATTTTATGAGTTCCATAAATCTGTTGTCACCTCGATAGGATCAAGGGGTAAAAAGAGCTTCCTTCAGTGT
GTTCAGTTAGGCCATCCAAGGGTTGATCTTGGGTATGGGTCCCTACATTGTTGTGTGAAAGCTAGTACCCTGCAAATAAAACCTATGAAGAAGAAGAAGAAGACGAAGGA
AAAAAAAAAGGTTATGGTGTGTGGTCTAATTGTTGAGATCAGGGGCGCCTTTGAGTTGGATTGCCCAGAAATTCTAAATGGCTGGCTTGGGGTGAGAATGTTCCAATCCT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTATTCTTCTTCATTGACCCAAAACTCAACTTCCCATTTCTTTTCCCCTGAAATCTCCGCTTCATCTTCTCTCAGGCATTTCATCAAACAGTTTGGCTGCAAGCA
ACCGCGCCCATCCCCATGTCGTAACCAATTCGGCTGTTCATGGAATTTTGGGAGATCTCTACATCCGGATGTGACGCTCGAGGATAGGAAGGGGTATATGAATGAACGGA
GATATGAGAGGAATCATGAGGAGATGAAAAAGTTTAGAGGGCGAGTTCCTTCAGCAGGGTTGGTGGATTGGGCGGCGAATTATCTTGCTATTTTTCGAGGGGCCTCTCGG
ACCAATTGTGAGGTGAGTAGAGGGGTGCCTCGGAGTTCAGTAAAATGGCTCCCGCCAGAGGAGAGATGGTATAAGGTGAAAGTGGATGCGGCATATTGTGAGGATTTGTC
TCGGGCAGGTGCTGGAATTATTGTTCAGGATGAGGTTGGGCGAGTCATGTTGTCAGCTGCTGTTAGCCATGATCATGTGGGGAATTCAGATTTGGCAGAGGGGCTAGCGG
TGGTGGACGGGATGAGGCTTGTGGTGGATATGGGTTTAGCTCCGGTAACCCTTGAGACTGACTCTATGCGGGTTTTCTCGCTGTTGCAAGAGCCTGCGATGGTGGATATG
TCTGAGTTCAGTGTGCTAGTTTCTGAGGCTCGAAAGGAGGTGGCGGTCGAGCCAGCGAAGATCGAGAATGGAAAATGGACCAGAGAACCATCTAAGCTGGAAGGTTTAGT
GTCTTTTGGGGGCTTTGTTTGTTTTAGATTGAAAGGGTGGGCACTTGCATGTTTAGTGGGCTTTATATTGATGCTTGATGCACCTGAGCATCAGTCCCATGTGCTTGGCT
TGTGTAGGGGCTCCCTTAGTTGTCTTGAATGGCTAGGGCGATTTTATGAGTTCCATAAATCTGTTGTCACCTCGATAGGATCAAGGGGTAAAAAGAGCTTCCTTCAGTGT
GTTCAGTTAGGCCATCCAAGGGTTGATCTTGGGTATGGGTCCCTACATTGTTGTGTGAAAGCTAGTACCCTGCAAATAAAACCTATGAAGAAGAAGAAGAAGACGAAGGA
AAAAAAAAAGGTTATGGTGTGTGGTCTAATTGTTGAGATCAGGGGCGCCTTTGAGTTGGATTGCCCAGAAATTCTAAATGGCTGGCTTGGGGTGAGAATGTTCCAATCCT
AG
Protein sequenceShow/hide protein sequence
MLYSSSLTQNSTSHFFSPEISASSSLRHFIKQFGCKQPRPSPCRNQFGCSWNFGRSLHPDVTLEDRKGYMNERRYERNHEEMKKFRGRVPSAGLVDWAANYLAIFRGASR
TNCEVSRGVPRSSVKWLPPEERWYKVKVDAAYCEDLSRAGAGIIVQDEVGRVMLSAAVSHDHVGNSDLAEGLAVVDGMRLVVDMGLAPVTLETDSMRVFSLLQEPAMVDM
SEFSVLVSEARKEVAVEPAKIENGKWTREPSKLEGLVSFGGFVCFRLKGWALACLVGFILMLDAPEHQSHVLGLCRGSLSCLEWLGRFYEFHKSVVTSIGSRGKKSFLQC
VQLGHPRVDLGYGSLHCCVKASTLQIKPMKKKKKTKEKKKVMVCGLIVEIRGAFELDCPEILNGWLGVRMFQS