CuGenDBv2

Gene ID	Lag0019674
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Mediator of RNA polymerase II transcription subunit 28
Genome location	chr5:44381544..44384026
RNA-Seq Expression	Lag0019674
Synteny	Lag0019674
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

9.5e-62

78.7

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQP+DQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                            VDVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KN+IIKKQE+LIEGW+KDLK+QLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

1.6e-61

79.88

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                            VDVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KNDIIKKQERLIEGW+KDLKEQLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

3.1e-60

77.51

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MA+RQP+DQQHQLDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                            +DVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQP KVETLRKEISAIEEEL+LKNDIIKK ERLIEGW+KDLK+QL KHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

1.6e-61

78.11

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQPLDQQ+Q+DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ                            +DVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL+LK+DIIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

5.6e-62

79.88

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQPLDQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                            VDVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQP KVETLRKEISAIEEEL+LKN+IIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

4.6e-62

78.7

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQP+DQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                            VDVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KN+IIKKQE+LIEGW+KDLK+QLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

7.9e-62

79.88

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                            VDVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KNDIIKKQERLIEGW+KDLKEQLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

7.9e-62

79.88

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQ LDQQH LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ                            VDVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL++KNDIIKKQERLIEGW+KDLKEQLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

7.9e-62

78.11

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Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQPLDQQ+Q+DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ                            +DVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL+LK+DIIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

7.9e-62

78.11

Show/hide

Query:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA
        MAERQPLDQQ+Q+DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ                            +DVERHARDFMEA
Subjt:  MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEA

Query:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        AKKLQLYFIGLQREDQPTKVETLRKEISAIEEEL+LK+DIIKKQERLIEGW+KDLK+QLDKHNNELEKV
Subjt:  AKKLQLYFIGLQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

1.8e-34

52.15

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Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEAAKKLQLY
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ                            +DVERHARDFMEAAKKLQLY
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEAAKKLQLY

Query:  FIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        F+GL+RED+ P++ E+L+K+I+ +EEEL+ K+++IKK  RL +  +K +KEQ++KH +ELEKV
Subjt:  FIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.3e-35

52.15

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Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEAAKKLQLY
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ                            +DVERHARDFMEAAKKLQLY
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEAAKKLQLY

Query:  FIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV
        F+GL+RED+ P++ E+L+K+I+ +EEEL+ K+++IKK  RL +  +K +KEQ++KH +ELEKV
Subjt:  FIGLQREDQ-PTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

Sequences

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CDS sequence

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ATGGCTGAACGACAACCACTCGACCAACAGCATCAACTTGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGC
TCTGCTTCCGTGCTTGCCTGCTAGAGAACTACAAGCAATAGACCGTTCTCCTCACCCTTCTCATCAAAGTCAATTTGTCAAGCTTGGGGTTTGTTGGACAAACCATGGGT
TTCTAATTCCACTCCCTCCTCATACAATTTTCCCAAATTCAGTTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTGTACTTCATTGGT
TTACAACGTGAGGATCAACCGACCAAAGTGGAAACTTTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAGATTAAAGAATGACATAATCAAGAAGCAAGAGAGGCT
CATTGAAGGGTGGAGAAAGGATTTGAAAGAGCAGTTAGACAAACATAACAATGAGTTAGAGAAGGTTTAG

mRNA sequence

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Protein sequence

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MAERQPLDQQHQLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQSQFVKLGVCWTNHGFLIPLPPHTIFPNSVDVERHARDFMEAAKKLQLYFIG
LQREDQPTKVETLRKEISAIEEELRLKNDIIKKQERLIEGWRKDLKEQLDKHNNELEKV

Lag0019674 (gene) of Sponge gourd (AG-4) v1 genome