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Lag0019760 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0019760
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:45190613..45190984
RNA-Seq ExpressionLag0019760
SyntenyLag0019760
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA92206.1 unnamed protein product [Arabis nemorensis]5.1e-0438.54Show/hide
Query:  QNQRTTTY-SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL
        Q  +T  Y +SPL AEA+A+R  L      GI+K+ ++SDS +LI   +     + E    + DIK LR  FS ++  +V+R  N L  ALAR V+
Subjt:  QNQRTTTY-SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL

XP_013653962.1 uncharacterized protein LOC106358691 [Brassica napus]3.0e-0440.7Show/hide
Query:  SPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL
        SP+ AEA+A+R  L    N+GI  L + SDS +LI V+ KKEL + E   I+ DI  L   FS +   +++R+ N+   +LA+Q L
Subjt:  SPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL

XP_023919081.1 uncharacterized protein LOC112030645 [Quercus suber]2.3e-0434.65Show/hide
Query:  SPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL-VNTPHLWLLDYPR
        SPL  EA A+   LE   ++G ++  I +DSL+L+  L +    +S    I+ +I+R   FF++L   HV RE N +   LAR  + V+   +W+ D P 
Subjt:  SPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL-VNTPHLWLLDYPR

Query:  L
        L
Subjt:  L

XP_024006562.1 uncharacterized protein LOC112083067 [Eutrema salsugineum]1.7e-0439.56Show/hide
Query:  SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVLVNTP
        SSPL  EA+AVR+ LE    +G  K+++ SD   LI+ + +KE  + EC  I+ DI+ L   F  +    V+R  N+L V+LA+  L  TP
Subjt:  SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVLVNTP

XP_030975730.1 uncharacterized protein LOC115995344 [Quercus lobata]1.0e-0432.46Show/hide
Query:  GVVQLAQNQRTTTYSSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQ-
        G V L+ +++T    + +  EA+A R  L+L    G +++T+  DS ILIS L+     +S    I+ DI+ L   FS +   HV R  NT+  +LAR+ 
Subjt:  GVVQLAQNQRTTTYSSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQ-

Query:  VLVNTPHLWLLDYP
        + ++   +W+ D P
Subjt:  VLVNTPHLWLLDYP

TrEMBL top hitse value%identityAlignment
A0A2N9F9I5 Uncharacterized protein1.7e-0538.54Show/hide
Query:  AEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL-VNTPHL-WLLDYP
        AEA+A R  L+L  ++G+  + +  DSL++I+ L  +E  ++    IIWDI+ L   F  +K  HV RE N     LAR+VL +++  L WL D P
Subjt:  AEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL-VNTPHL-WLLDYP

A0A2N9GHW6 Reverse transcriptase domain-containing protein5.5e-0438.54Show/hide
Query:  AEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL-VNTPHL-WLLDYP
        AEA+A R  L+L  +IG+  + +  DSL +I+ L  +E  ++    II DI+ L   F  +K  HV RE N     LAR+VL +++  L WL D P
Subjt:  AEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL-VNTPHL-WLLDYP

A0A2N9J6Y2 Uncharacterized protein1.1e-0435.42Show/hide
Query:  AEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVLVNTPH--LWLLDYP
        AEA+A R  L+L  ++G+  + +  DSL++I+ L  +E  ++    IIWDI+ L   F  +   HV RE N     LAR+ L  +    +WL D P
Subjt:  AEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVLVNTPH--LWLLDYP

A0A565AS28 RNase H domain-containing protein2.4e-0438.54Show/hide
Query:  QNQRTTTY-SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL
        Q  +T  Y +SPL AEA+A+R  L      GI+K+ ++SDS +LI   +     + E    + DIK LR  FS ++  +V+R  N L  ALAR V+
Subjt:  QNQRTTTY-SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL

A0A6J0K8Y9 uncharacterized protein LOC1088152895.5e-0434.34Show/hide
Query:  QLAQNQRTTTY-SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL
        ++ Q  RT  Y  SPL AEA+A+R+ +    N+GI+ L++FSD++ LI   +  +   SE   I+ DI+++   F ++   H++R  N+    LA+Q L
Subjt:  QLAQNQRTTTY-SSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0436.78Show/hide
Query:  PLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVLVN
        PL AEA+A+   L+   +IGI KL++ SDS  LI+  +  E   +E   II+DI  L   F+D+    V R  N +   LA+  L++
Subjt:  PLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVLVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGGTGCAGCTGGCTCAAAATCAAAGAACAACGACTTATAGTTCACCGTTGTGTGCTGAGGCGGTGGCAGTTCGAGCTAGGTTGGAATTGGAGCACAATATCGG
TATAGAGAAATTGACTATTTTCTCTGATTCCCTTATTCTGATTTCGGTCCTTCTGAAAAAGGAGCTGATGGTGTCGGAATGTGCAACGATTATTTGGGATATTAAGCGAC
TCCGTGAATTTTTTTCGGACCTAAAAATTTTTCATGTAAATCGTGAGTTCAATACTTTAACAGTTGCTTTAGCCCGTCAAGTGTTGGTTAATACGCCACACTTGTGGCTC
TTAGACTATCCCAGATTGGATAATTCATCTGGCTCGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGGTGCAGCTGGCTCAAAATCAAAGAACAACGACTTATAGTTCACCGTTGTGTGCTGAGGCGGTGGCAGTTCGAGCTAGGTTGGAATTGGAGCACAATATCGG
TATAGAGAAATTGACTATTTTCTCTGATTCCCTTATTCTGATTTCGGTCCTTCTGAAAAAGGAGCTGATGGTGTCGGAATGTGCAACGATTATTTGGGATATTAAGCGAC
TCCGTGAATTTTTTTCGGACCTAAAAATTTTTCATGTAAATCGTGAGTTCAATACTTTAACAGTTGCTTTAGCCCGTCAAGTGTTGGTTAATACGCCACACTTGTGGCTC
TTAGACTATCCCAGATTGGATAATTCATCTGGCTCGAGATGA
Protein sequenceShow/hide protein sequence
MGVVQLAQNQRTTTYSSPLCAEAVAVRARLELEHNIGIEKLTIFSDSLILISVLLKKELMVSECATIIWDIKRLREFFSDLKIFHVNREFNTLTVALARQVLVNTPHLWL
LDYPRLDNSSGSR